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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6421 O_BomoMSG15780_3prime_partial:A_BomoMSG_c25269_g1_i2
208bp
 thioredoxin_family_Trp26_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006974 P cellular response to DNA damage stimulus
6422 O_BomoMSG15781_internal:A_BomoMSG_c25269_g1_i3
111bp
 thioredoxin_family_Trp26_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006974 P cellular response to DNA damage stimulus
6423 O_BomoMSG15782_complete:A_BomoMSG_c25269_g2_i1
1643bp
 protein_PFC0760c_isoform_X2_[Bombyx_mori]
6424 O_BomoMSG15783_complete:A_BomoMSG_c25269_g2_i1
192bp
6425 O_BomoMSG15784_complete:A_BomoMSG_c25269_g2_i2
1618bp
 MATH_and_LRR_domain-containing_protein_PFE0570w_isoform_X1_[Bombyx_mori]
6426 O_BomoMSG15785_complete:A_BomoMSG_c25269_g2_i2
192bp
6427 O_BomoMSG15786_5prime_partial:A_BomoMSG_c25269_g2_i3
208bp
 MATH_and_LRR_domain-containing_protein_PFE0570w_isoform_X1_[Bombyx_mori]
6428 O_BomoMSG15787_complete:A_BomoMSG_c25269_g2_i4
1092bp
 dentin_sialophosphoprotein-like_[Bombyx_mori]
6429 O_BomoMSG15788_complete:A_BomoMSG_c25269_g2_i4
192bp
6430 O_BomoMSG15789_internal:A_BomoMSG_c25271_g1_i1
371bp
 uncharacterized_protein_LOC101746153_isoform_X2_[Bombyx_mori]
6431 O_BomoMSG1578_internal:A_BomoMSG_c7692_g1_i1
222bp
 PREDICTED:_uncharacterized_protein_LOC106721395_[Papilio_machaon]
6432 O_BomoMSG15790_5prime_partial:A_BomoMSG_c25271_g1_i1
156bp
6433 O_BomoMSG15791_5prime_partial:A_BomoMSG_c25271_g2_i1
629bp
 uncharacterized_protein_LOC101746153_isoform_X1_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001104 F transcription coregulator activity
GO:0002039 F p53 binding
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0008134 F transcription factor binding
GO:0035064 F methylated histone binding
GO:0042162 F telomeric DNA binding
GO:0042393 F histone binding
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:1990391 C DNA repair complex
6434 O_BomoMSG15792_complete:A_BomoMSG_c25271_g2_i1
100bp
6435 O_BomoMSG15793_5prime_partial:A_BomoMSG_c25271_g2_i2
644bp
 uncharacterized_protein_LOC101746153_isoform_X1_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001104 F transcription coregulator activity
GO:0002039 F p53 binding
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0008134 F transcription factor binding
GO:0035064 F methylated histone binding
GO:0042162 F telomeric DNA binding
GO:0042393 F histone binding
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:1990391 C DNA repair complex
6436 O_BomoMSG15794_complete:A_BomoMSG_c25271_g2_i2
100bp
6437 O_BomoMSG15795_complete:A_BomoMSG_c25272_g1_i1
209bp
 LOW_QUALITY_PROTEIN:_thymidylate_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004798 F thymidylate kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006227 P dUDP biosynthetic process
GO:0006233 P dTDP biosynthetic process
GO:0006235 P dTTP biosynthetic process
GO:0007049 P cell cycle
GO:0008283 P cell population proliferation
GO:0009041 F uridylate kinase activity
GO:0009165 P nucleotide biosynthetic process
GO:0015949 P nucleobase-containing small molecule interconversion
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0043627 P response to estrogen
GO:0045445 P myoblast differentiation
GO:0046686 P response to cadmium ion
GO:0046939 P nucleotide phosphorylation
GO:0046940 P nucleoside monophosphate phosphorylation
GO:0050145 F nucleoside monophosphate kinase activity
GO:0071363 P cellular response to growth factor stimulus
6438 O_BomoMSG15796_complete:A_BomoMSG_c25272_g1_i2
209bp
 LOW_QUALITY_PROTEIN:_thymidylate_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004798 F thymidylate kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006227 P dUDP biosynthetic process
GO:0006233 P dTDP biosynthetic process
GO:0006235 P dTTP biosynthetic process
GO:0007049 P cell cycle
GO:0008283 P cell population proliferation
GO:0009041 F uridylate kinase activity
GO:0009165 P nucleotide biosynthetic process
GO:0015949 P nucleobase-containing small molecule interconversion
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0043627 P response to estrogen
GO:0045445 P myoblast differentiation
GO:0046686 P response to cadmium ion
GO:0046939 P nucleotide phosphorylation
GO:0046940 P nucleoside monophosphate phosphorylation
GO:0050145 F nucleoside monophosphate kinase activity
GO:0071363 P cellular response to growth factor stimulus
6439 O_BomoMSG15797_5prime_partial:A_BomoMSG_c25273_g1_i1
269bp
 protein_sel-1_homolog_1_isoform_X3_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007219 P Notch signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030970 P retrograde protein transport, ER to cytosol
GO:0034976 P response to endoplasmic reticulum stress
GO:0036503 P ERAD pathway
GO:0036513 C Derlin-1 retrotranslocation complex
6440 O_BomoMSG15798_3prime_partial:A_BomoMSG_c25273_g1_i1
147bp
6441 O_BomoMSG15799_5prime_partial:A_BomoMSG_c25273_g1_i1
126bp
6442 O_BomoMSG1579_3prime_partial:A_BomoMSG_c7704_g1_i1
168bp
 neurotactin_isoform_X1_[Bombyx_mori]
6443 O_BomoMSG157_internal:A_BomoMSG_c609_g1_i1
117bp
 DNA_polymerase_theta_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003684 F damaged DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0043142 F single-stranded DNA helicase activity
GO:0051260 P protein homooligomerization
GO:0051575 F 5'-deoxyribose-5-phosphate lyase activity
GO:0071897 P DNA biosynthetic process
GO:0097681 P double-strand break repair via alternative nonhomologous end joining
GO:2000042 P negative regulation of double-strand break repair via homologous recombination
6444 O_BomoMSG15800_internal:A_BomoMSG_c25274_g1_i2
126bp
 PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN2_isoform_X3_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016787 F hydrolase activity
GO:0031251 C PAN complex
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
6445 O_BomoMSG15801_5prime_partial:A_BomoMSG_c25274_g1_i3
794bp
 PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN2_isoform_X2_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016787 F hydrolase activity
GO:0031251 C PAN complex
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
6446 O_BomoMSG15802_complete:A_BomoMSG_c25274_g1_i4
177bp
 PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN2_isoform_X3_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0016787 F hydrolase activity
GO:0031251 C PAN complex
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
6447 O_BomoMSG15803_complete:A_BomoMSG_c25275_g1_i1
121bp
 proton-coupled_folate_transporter_[Bombyx_mori]
6448 O_BomoMSG15804_complete:A_BomoMSG_c25275_g1_i2
121bp
 proton-coupled_folate_transporter_[Bombyx_mori]
6449 O_BomoMSG15805_3prime_partial:A_BomoMSG_c25277_g1_i1
343bp
 mRNA_export_protein_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0071407 P cellular response to organic cyclic compound
6450 O_BomoMSG15806_complete:A_BomoMSG_c25277_g1_i1
103bp
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