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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6331 O_BomoMSG1569_internal:A_BomoMSG_c7663_g1_i1
116bp
 dicer-2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004525 F ribonuclease III activity
GO:0004530 F deoxyribonuclease I activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006309 P apoptotic DNA fragmentation
GO:0006396 P RNA processing
GO:0016442 C RISC complex
GO:0016787 F hydrolase activity
GO:0016891 F endoribonuclease activity, producing 5'-phosphomonoesters
GO:0030422 P production of siRNA involved in RNA interference
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0046872 F metal ion binding
GO:0070578 C RISC-loading complex
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
6332 O_BomoMSG156_3prime_partial:A_BomoMSG_c601_g1_i1
118bp
MULTISPECIES:_hypothetical_protein_[Pseudomonas]
6333 O_BomoMSG15700_internal:A_BomoMSG_c25235_g1_i1
402bp
 PREDICTED:_zinc_finger_BED_domain-containing_protein_1-like_[Amyelois_transitella]
GO:0000228 C nuclear chromosome
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004803 F transposase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0015629 C actin cytoskeleton
GO:0046872 F metal ion binding
GO:0046983 F protein dimerization activity
6334 O_BomoMSG15701_5prime_partial:A_BomoMSG_c25235_g1_i2
591bp
 PREDICTED:_zinc_finger_BED_domain-containing_protein_1-like_[Amyelois_transitella]
GO:0000228 C nuclear chromosome
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004803 F transposase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0015629 C actin cytoskeleton
GO:0046872 F metal ion binding
GO:0046983 F protein dimerization activity
6335 O_BomoMSG15702_internal:A_BomoMSG_c25235_g1_i3
426bp
 PREDICTED:_zinc_finger_BED_domain-containing_protein_1-like_[Amyelois_transitella]
GO:0000228 C nuclear chromosome
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004803 F transposase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0015629 C actin cytoskeleton
GO:0046872 F metal ion binding
GO:0046983 F protein dimerization activity
6336 O_BomoMSG15703_internal:A_BomoMSG_c25236_g1_i1
141bp
 alsin_[Bombyx_mori]
GO:0001662 P behavioral fear response
GO:0001701 P in utero embryonic development
GO:0001726 C ruffle
GO:0001881 P receptor recycling
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005087 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005769 C early endosome
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0006979 P response to oxidative stress
GO:0007032 P endosome organization
GO:0007409 P axonogenesis
GO:0007528 P neuromuscular junction development
GO:0007626 P locomotory behavior
GO:0008104 P protein localization
GO:0008219 P cell death
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016050 P vesicle organization
GO:0016197 P endosomal transport
GO:0016601 P Rac protein signal transduction
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0030027 C lamellipodium
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031982 C vesicle
GO:0035022 P positive regulation of Rac protein signal transduction
GO:0035023 P regulation of Rho protein signal transduction
GO:0035249 P synaptic transmission, glutamatergic
GO:0042803 F protein homodimerization activity
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043087 P regulation of GTPase activity
GO:0043197 C dendritic spine
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0043539 F protein serine/threonine kinase activator activity
GO:0043547 P positive regulation of GTPase activity
GO:0045860 P positive regulation of protein kinase activity
GO:0048812 P neuron projection morphogenesis
GO:0051036 P regulation of endosome size
GO:0071902 P positive regulation of protein serine/threonine kinase activity
6337 O_BomoMSG15704_internal:A_BomoMSG_c25236_g1_i2
401bp
 alsin_[Bombyx_mori]
GO:0001662 P behavioral fear response
GO:0001701 P in utero embryonic development
GO:0001726 C ruffle
GO:0001881 P receptor recycling
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005769 C early endosome
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0006979 P response to oxidative stress
GO:0007032 P endosome organization
GO:0007041 P lysosomal transport
GO:0007409 P axonogenesis
GO:0007528 P neuromuscular junction development
GO:0007626 P locomotory behavior
GO:0008104 P protein localization
GO:0008219 P cell death
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016050 P vesicle organization
GO:0016197 P endosomal transport
GO:0016601 P Rac protein signal transduction
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0030027 C lamellipodium
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031982 C vesicle
GO:0035023 P regulation of Rho protein signal transduction
GO:0035249 P synaptic transmission, glutamatergic
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043087 P regulation of GTPase activity
GO:0043197 C dendritic spine
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0043539 F protein serine/threonine kinase activator activity
GO:0043547 P positive regulation of GTPase activity
GO:0045860 P positive regulation of protein kinase activity
GO:0048365 F small GTPase binding
GO:0048812 P neuron projection morphogenesis
GO:0051036 P regulation of endosome size
GO:0051260 P protein homooligomerization
GO:0071902 P positive regulation of protein serine/threonine kinase activity
6338 O_BomoMSG15705_internal:A_BomoMSG_c25236_g1_i3
116bp
 alsin_[Bombyx_mori]
6339 O_BomoMSG15706_internal:A_BomoMSG_c25236_g1_i4
390bp
 alsin_[Bombyx_mori]
GO:0001662 P behavioral fear response
GO:0001701 P in utero embryonic development
GO:0001726 C ruffle
GO:0001881 P receptor recycling
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005769 C early endosome
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0006979 P response to oxidative stress
GO:0007032 P endosome organization
GO:0007041 P lysosomal transport
GO:0007409 P axonogenesis
GO:0007528 P neuromuscular junction development
GO:0007626 P locomotory behavior
GO:0008104 P protein localization
GO:0008219 P cell death
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016050 P vesicle organization
GO:0016197 P endosomal transport
GO:0016601 P Rac protein signal transduction
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0030027 C lamellipodium
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031982 C vesicle
GO:0035023 P regulation of Rho protein signal transduction
GO:0035249 P synaptic transmission, glutamatergic
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043087 P regulation of GTPase activity
GO:0043197 C dendritic spine
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0043539 F protein serine/threonine kinase activator activity
GO:0043547 P positive regulation of GTPase activity
GO:0045860 P positive regulation of protein kinase activity
GO:0048365 F small GTPase binding
GO:0048812 P neuron projection morphogenesis
GO:0051036 P regulation of endosome size
GO:0051260 P protein homooligomerization
GO:0071902 P positive regulation of protein serine/threonine kinase activity
6340 O_BomoMSG15707_complete:A_BomoMSG_c25237_g1_i1
197bp
 N-acetyltransferase_9_[Bombyx_mori]
GO:0005515 F protein binding
GO:0006474 P N-terminal protein amino acid acetylation
GO:0008080 F N-acetyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0043234 C protein-containing complex
6341 O_BomoMSG15708_complete:A_BomoMSG_c25238_g1_i1
125bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_calcium_homeostasis_endoplasmic_reticulum_protein_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006396 P RNA processing
GO:0006874 P cellular calcium ion homeostasis
GO:0007399 P nervous system development
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0033017 C sarcoplasmic reticulum membrane
GO:0044325 F transmembrane transporter binding
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051209 P release of sequestered calcium ion into cytosol
GO:0051533 P positive regulation of calcineurin-NFAT signaling cascade
6342 O_BomoMSG15709_3prime_partial:A_BomoMSG_c25238_g1_i1
102bp
 calcium_homeostasis_endoplasmic_reticulum_protein_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006396 P RNA processing
GO:0006874 P cellular calcium ion homeostasis
GO:0007399 P nervous system development
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0033017 C sarcoplasmic reticulum membrane
GO:0044325 F transmembrane transporter binding
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051209 P release of sequestered calcium ion into cytosol
GO:0051533 P positive regulation of calcineurin-NFAT signaling cascade
6343 O_BomoMSG1570_internal:A_BomoMSG_c7665_g1_i1
147bp
 FIB-L_protein_[Bombyx_mori]
GO:0005576 C extracellular region
6344 O_BomoMSG15710_3prime_partial:A_BomoMSG_c25238_g1_i2
210bp
 calcium_homeostasis_endoplasmic_reticulum_protein_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006396 P RNA processing
GO:0006874 P cellular calcium ion homeostasis
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0044325 F transmembrane transporter binding
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051209 P release of sequestered calcium ion into cytosol
GO:0051533 P positive regulation of calcineurin-NFAT signaling cascade
6345 O_BomoMSG15711_3prime_partial:A_BomoMSG_c25238_g1_i3
127bp
 calcium_homeostasis_endoplasmic_reticulum_protein_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006396 P RNA processing
GO:0006874 P cellular calcium ion homeostasis
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0044325 F transmembrane transporter binding
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051209 P release of sequestered calcium ion into cytosol
GO:0051533 P positive regulation of calcineurin-NFAT signaling cascade
6346 O_BomoMSG15712_complete:A_BomoMSG_c25240_g1_i2
100bp
6347 O_BomoMSG15713_3prime_partial:A_BomoMSG_c25241_g1_i2
121bp
6348 O_BomoMSG15714_5prime_partial:A_BomoMSG_c25241_g1_i2
116bp
 ectonucleoside_triphosphate_diphosphohydrolase_5_isoform_X2_[Bombyx_mori]
GO:0004382 F guanosine-diphosphatase activity
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0017110 F nucleoside-diphosphatase activity
GO:0030659 C cytoplasmic vesicle membrane
GO:0045134 F uridine-diphosphatase activity
GO:0046048 P UDP metabolic process
GO:0046710 P GDP metabolic process
GO:0046872 F metal ion binding
6349 O_BomoMSG15715_5prime_partial:A_BomoMSG_c25242_g1_i2
203bp
 dihydrofolate_reductase-like_isoform_X1_[Bombyx_mori]
GO:0004146 F dihydrofolate reductase activity
GO:0005575 C cellular_component
GO:0006545 P glycine biosynthetic process
GO:0006730 P one-carbon metabolic process
GO:0009165 P nucleotide biosynthetic process
GO:0016491 F oxidoreductase activity
GO:0046654 P tetrahydrofolate biosynthetic process
GO:0050661 F NADP binding
GO:0055114 P obsolete oxidation-reduction process
6350 O_BomoMSG15716_5prime_partial:A_BomoMSG_c25244_g1_i1
688bp
 ribosome_biogenesis_protein_BMS1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0042254 P ribosome biogenesis
GO:0042255 P ribosome assembly
GO:0044822 F RNA binding
6351 O_BomoMSG15717_complete:A_BomoMSG_c25244_g1_i1
106bp
6352 O_BomoMSG15718_complete:A_BomoMSG_c25244_g1_i2
1128bp
 ribosome_biogenesis_protein_BMS1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006364 P rRNA processing
GO:0042254 P ribosome biogenesis
GO:0042255 P ribosome assembly
GO:0072686 C mitotic spindle
6353 O_BomoMSG15719_complete:A_BomoMSG_c25244_g1_i2
132bp
6354 O_BomoMSG1571_3prime_partial:A_BomoMSG_c7666_g1_i1
200bp
 membrane-bound_transcription_factor_site-1_protease_[Helicoverpa_armigera]
GO:0000139 C Golgi membrane
GO:0004252 F serine-type endopeptidase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0006629 P lipid metabolic process
GO:0007040 P lysosome organization
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0031293 P membrane protein intracellular domain proteolysis
GO:0034976 P response to endoplasmic reticulum stress
6355 O_BomoMSG15720_complete:A_BomoMSG_c25244_g1_i2
106bp
6356 O_BomoMSG15721_3prime_partial:A_BomoMSG_c25246_g1_i1
478bp
 ATP-dependent_RNA_helicase_DDX42_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
6357 O_BomoMSG15722_internal:A_BomoMSG_c25246_g1_i2
139bp
 ATP-dependent_RNA_helicase_DDX42_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
6358 O_BomoMSG15723_internal:A_BomoMSG_c25246_g1_i3
120bp
 ATP-dependent_RNA_helicase_DDX42_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
6359 O_BomoMSG15724_internal:A_BomoMSG_c25246_g1_i4
436bp
 ATP-dependent_RNA_helicase_DDX42_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
6360 O_BomoMSG15725_3prime_partial:A_BomoMSG_c25247_g1_i1
361bp
 uncharacterized_protein_LOC101738272_[Bombyx_mori]
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