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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6301 O_BomoMSG15672_5prime_partial:A_BomoMSG_c25224_g1_i1
394bp
 facilitated_trehalose_transporter_Tret1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
6302 O_BomoMSG15673_5prime_partial:A_BomoMSG_c25224_g1_i2
138bp
 facilitated_trehalose_transporter_Tret1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
6303 O_BomoMSG15674_5prime_partial:A_BomoMSG_c25224_g1_i3
113bp
 facilitated_trehalose_transporter_Tret1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
6304 O_BomoMSG15675_complete:A_BomoMSG_c25225_g1_i1
463bp
 serine/threonine-protein_phosphatase_2A_56_kDa_regulatory_subunit_epsilon_isoform_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0000775 C chromosome, centromeric region
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007165 P signal transduction
GO:0008601 F protein phosphatase regulator activity
GO:0016020 C membrane
GO:0019900 F kinase binding
GO:0030018 C Z disc
GO:0031430 C M band
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0035307 P positive regulation of protein dephosphorylation
GO:0090005 P negative regulation of protein localization to plasma membrane
GO:0090219 P negative regulation of lipid kinase activity
GO:1904886 P beta-catenin destruction complex disassembly
6305 O_BomoMSG15676_3prime_partial:A_BomoMSG_c25226_g1_i1
153bp
 LOW_QUALITY_PROTEIN:_protein_asteroid_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007526 P larval somatic muscle development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
6306 O_BomoMSG15677_5prime_partial:A_BomoMSG_c25227_g1_i1
106bp
 protein_PRRC1_[Bombyx_mori]
GO:0005794 C Golgi apparatus
6307 O_BomoMSG15678_3prime_partial:A_BomoMSG_c25227_g2_i1
254bp
 protein_PRRC1_[Bombyx_mori]
GO:0001757 P somite specification
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0010669 P epithelial structure maintenance
GO:0034199 P activation of protein kinase A activity
GO:0034237 F protein kinase A regulatory subunit binding
6308 O_BomoMSG15679_complete:A_BomoMSG_c25227_g2_i1
104bp
6309 O_BomoMSG1567_internal:A_BomoMSG_c7654_g1_i1
106bp
6310 O_BomoMSG15680_5prime_partial:A_BomoMSG_c25227_g1_i2
106bp
 protein_PRRC1_[Bombyx_mori]
GO:0005794 C Golgi apparatus
6311 O_BomoMSG15681_internal:A_BomoMSG_c25228_g1_i1
344bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Dufourea_novaeangliae]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
6312 O_BomoMSG15682_internal:A_BomoMSG_c25231_g1_i1
133bp
 uncharacterized_protein_LOC105842278,_partial_[Bombyx_mori]
6313 O_BomoMSG15683_internal:A_BomoMSG_c25231_g1_i2
229bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Papilio_machaon]
6314 O_BomoMSG15684_internal:A_BomoMSG_c25231_g1_i3
292bp
 PREDICTED:_uncharacterized_protein_LOC105386260_[Plutella_xylostella]
GO:0000287 F magnesium ion binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005737 C cytoplasm
GO:0006401 P RNA catabolic process
GO:0016787 F hydrolase activity
GO:0043137 P DNA replication, removal of RNA primer
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
6315 O_BomoMSG15685_internal:A_BomoMSG_c25231_g1_i4
325bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X1_[Papilio_machaon]
GO:0000287 F magnesium ion binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005737 C cytoplasm
GO:0006401 P RNA catabolic process
GO:0016787 F hydrolase activity
GO:0043137 P DNA replication, removal of RNA primer
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
6316 O_BomoMSG15686_3prime_partial:A_BomoMSG_c25232_g1_i1
630bp
 probable_cleavage_and_polyadenylation_specificity_factor_subunit_2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0006398 P mRNA 3'-end processing by stem-loop binding and cleavage
GO:0022008 P neurogenesis
6317 O_BomoMSG15687_complete:A_BomoMSG_c25232_g1_i1
304bp
6318 O_BomoMSG15688_complete:A_BomoMSG_c25232_g1_i1
145bp
6319 O_BomoMSG15689_complete:A_BomoMSG_c25232_g1_i1
118bp
6320 O_BomoMSG1568_internal:A_BomoMSG_c7654_g1_i1
106bp
6321 O_BomoMSG15690_internal:A_BomoMSG_c25232_g1_i2
260bp
 probable_cleavage_and_polyadenylation_specificity_factor_subunit_2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0006398 P mRNA 3'-end processing by stem-loop binding and cleavage
GO:0022008 P neurogenesis
6322 O_BomoMSG15691_3prime_partial:A_BomoMSG_c25232_g1_i2
199bp
6323 O_BomoMSG15692_complete:A_BomoMSG_c25232_g1_i2
118bp
6324 O_BomoMSG15693_5prime_partial:A_BomoMSG_c25233_g1_i1
547bp
 inverted_formin-2-like_[Bombyx_mori]
6325 O_BomoMSG15694_complete:A_BomoMSG_c25233_g1_i1
165bp
6326 O_BomoMSG15695_5prime_partial:A_BomoMSG_c25233_g1_i2
504bp
 inverted_formin-2-like_[Bombyx_mori]
6327 O_BomoMSG15696_complete:A_BomoMSG_c25233_g1_i2
165bp
6328 O_BomoMSG15697_3prime_partial:A_BomoMSG_c25234_g1_i3
218bp
 mediator_of_RNA_polymerase_II_transcription_subunit_13_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0004252 F serine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0016592 C mediator complex
GO:0022416 P chaeta development
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0036011 P imaginal disc-derived leg segmentation
GO:0045165 P cell fate commitment
GO:0045498 P sex comb development
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0048749 P compound eye development
GO:0070847 C core mediator complex
6329 O_BomoMSG15698_complete:A_BomoMSG_c25234_g1_i4
158bp
 mediator_of_RNA_polymerase_II_transcription_subunit_13_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0004252 F serine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0016592 C mediator complex
GO:0022416 P chaeta development
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0036011 P imaginal disc-derived leg segmentation
GO:0045165 P cell fate commitment
GO:0045498 P sex comb development
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0048749 P compound eye development
GO:0070847 C core mediator complex
6330 O_BomoMSG15699_complete:A_BomoMSG_c25234_g1_i5
212bp
 mediator_of_RNA_polymerase_2_transcription_subunit_13_like_protein_[Danaus_plexippus_plexippus]
GO:0001104 F transcription coregulator activity
GO:0004252 F serine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0016592 C mediator complex
GO:0022416 P chaeta development
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0036011 P imaginal disc-derived leg segmentation
GO:0045165 P cell fate commitment
GO:0045498 P sex comb development
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0048749 P compound eye development
GO:0070847 C core mediator complex
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