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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6001 O_BomoMSG15401_5prime_partial:A_BomoMSG_c25127_g1_i5
328bp
 insulin-like_growth_factor_2_mRNA-binding_protein_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006810 P transport
GO:0010494 C cytoplasmic stress granule
GO:0010610 P regulation of mRNA stability involved in response to stress
GO:0010976 P positive regulation of neuron projection development
GO:0017148 P negative regulation of translation
GO:0022013 P pallium cell proliferation in forebrain
GO:0030027 C lamellipodium
GO:0030175 C filopodium
GO:0030426 C growth cone
GO:0030529 C ribonucleoprotein complex
GO:0042995 C cell projection
GO:0044822 F RNA binding
GO:0045182 F translation regulator activity
GO:0048027 F mRNA 5'-UTR binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051028 P mRNA transport
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0097150 P neuronal stem cell population maintenance
6002 O_BomoMSG15402_complete:A_BomoMSG_c25127_g1_i5
107bp
6003 O_BomoMSG15403_complete:A_BomoMSG_c25127_g1_i5
102bp
6004 O_BomoMSG15404_3prime_partial:A_BomoMSG_c25128_g1_i1
282bp
 WD_repeat-containing_protein_CG11141_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
6005 O_BomoMSG15405_complete:A_BomoMSG_c25128_g1_i2
383bp
 WD_repeat-containing_protein_CG11141_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
6006 O_BomoMSG15406_internal:A_BomoMSG_c25129_g1_i1
378bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101742325_[Bombyx_mori]
6007 O_BomoMSG15407_5prime_partial:A_BomoMSG_c25129_g1_i1
206bp
6008 O_BomoMSG15408_internal:A_BomoMSG_c25129_g1_i2
353bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101742325_[Bombyx_mori]
6009 O_BomoMSG15409_5prime_partial:A_BomoMSG_c25129_g1_i2
206bp
6010 O_BomoMSG1540_internal:A_BomoMSG_c7549_g1_i1
105bp
 uncharacterized_protein_LOC101742063_isoform_X3_[Bombyx_mori]
6011 O_BomoMSG15410_internal:A_BomoMSG_c25129_g1_i3
518bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101742325_[Bombyx_mori]
6012 O_BomoMSG15411_5prime_partial:A_BomoMSG_c25129_g1_i3
206bp
6013 O_BomoMSG15412_complete:A_BomoMSG_c25129_g1_i3
105bp
6014 O_BomoMSG15413_3prime_partial:A_BomoMSG_c25130_g1_i1
470bp
 glucose_dehydrogenase_[FAD,_quinone]-like_isoform_X1_[Bombyx_mori]
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
6015 O_BomoMSG15414_internal:A_BomoMSG_c25130_g1_i2
233bp
 glucose_dehydrogenase_[FAD,_quinone]-like_isoform_X2_[Bombyx_mori]
GO:0008802 F betaine-aldehyde dehydrogenase activity
GO:0008812 F choline dehydrogenase activity
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019285 P glycine betaine biosynthetic process from choline
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
6016 O_BomoMSG15415_internal:A_BomoMSG_c25130_g1_i3
208bp
 glucose_dehydrogenase_[FAD,_quinone]-like_isoform_X2_[Bombyx_mori]
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
6017 O_BomoMSG15416_3prime_partial:A_BomoMSG_c25131_g1_i1
341bp
 cell_division_control_protein_45_homolog_[Bombyx_mori]
GO:0000076 P DNA replication checkpoint signaling
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000083 P regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0000727 P double-strand break repair via break-induced replication
GO:0003682 F chromatin binding
GO:0003688 F DNA replication origin binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005656 C nuclear pre-replicative complex
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0006260 P DNA replication
GO:0006267 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006270 P DNA replication initiation
GO:0007049 P cell cycle
GO:0031261 C DNA replication preinitiation complex
GO:0031298 C replication fork protection complex
GO:0031938 P obsolete regulation of chromatin silencing at telomere
GO:0032508 P DNA duplex unwinding
GO:0043138 F 3'-5' DNA helicase activity
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:1902977 P mitotic DNA replication preinitiation complex assembly
6018 O_BomoMSG15417_3prime_partial:A_BomoMSG_c25132_g1_i1
225bp
 39S_ribosomal_protein_L16,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019843 F rRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
6019 O_BomoMSG15418_5prime_partial:A_BomoMSG_c25133_g1_i1
100bp
6020 O_BomoMSG15419_5prime_partial:A_BomoMSG_c25134_g1_i1
452bp
 uncharacterized_protein_LOC101738535_isoform_X1_[Bombyx_mori]
6021 O_BomoMSG1541_internal:A_BomoMSG_c7558_g1_i1
111bp
 protein_AF-10_isoform_X16_[Bombyx_mori]
6022 O_BomoMSG15420_5prime_partial:A_BomoMSG_c25134_g1_i2
184bp
 uncharacterized_protein_LOC101738535_isoform_X2_[Bombyx_mori]
6023 O_BomoMSG15421_5prime_partial:A_BomoMSG_c25134_g1_i3
208bp
 uncharacterized_protein_LOC101738535_isoform_X2_[Bombyx_mori]
6024 O_BomoMSG15422_internal:A_BomoMSG_c25135_g1_i1
161bp
 conserved_oligomeric_Golgi_complex_subunit_5_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0032588 C trans-Golgi network membrane
6025 O_BomoMSG15423_5prime_partial:A_BomoMSG_c25135_g1_i1
117bp
6026 O_BomoMSG15424_3prime_partial:A_BomoMSG_c25135_g1_i2
327bp
 conserved_oligomeric_Golgi_complex_subunit_5_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0048219 P inter-Golgi cisterna vesicle-mediated transport
6027 O_BomoMSG15425_5prime_partial:A_BomoMSG_c25135_g1_i2
117bp
6028 O_BomoMSG15426_internal:A_BomoMSG_c25135_g1_i3
135bp
 conserved_oligomeric_Golgi_complex_subunit_5_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000916 P actomyosin contractile ring contraction
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0007110 P meiosis I cytokinesis
GO:0007111 P meiosis II cytokinesis
GO:0007112 P male meiosis cytokinesis
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007290 P spermatid nucleus elongation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0030154 P cell differentiation
GO:0061024 P membrane organization
6029 O_BomoMSG15427_5prime_partial:A_BomoMSG_c25135_g1_i3
117bp
6030 O_BomoMSG15428_complete:A_BomoMSG_c25136_g1_i3
263bp
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