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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5281 O_BomoMSG14754_internal:A_BomoMSG_c24918_g2_i4
104bp
5282 O_BomoMSG14755_complete:A_BomoMSG_c24919_g1_i1
139bp
 lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_isoform_X3_[Bombyx_mori]
GO:0001817 P regulation of cytokine production
GO:0004871 F obsolete signal transducer activity
GO:0005576 C extracellular region
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0007568 P aging
GO:0016020 C membrane
GO:0032496 P response to lipopolysaccharide
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 C intracellular membrane-bounded organelle
GO:0050699 F WW domain binding
GO:0071222 P cellular response to lipopolysaccharide
5283 O_BomoMSG14756_5prime_partial:A_BomoMSG_c24922_g1_i1
338bp
 uncharacterized_protein_LOC101736218_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0030099 P myeloid cell differentiation
GO:0030225 P macrophage differentiation
GO:0030851 P granulocyte differentiation
GO:0043249 P erythrocyte maturation
5284 O_BomoMSG14757_5prime_partial:A_BomoMSG_c24922_g1_i2
183bp
 lethal(3)malignant_brain_tumor-like_protein_3_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0031519 C PcG protein complex
GO:0035102 C PRC1 complex
GO:0046872 F metal ion binding
5285 O_BomoMSG14758_5prime_partial:A_BomoMSG_c24922_g1_i3
157bp
 uncharacterized_protein_LOC101736218_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0031519 C PcG protein complex
GO:0035102 C PRC1 complex
GO:0046872 F metal ion binding
5286 O_BomoMSG14759_internal:A_BomoMSG_c24924_g1_i1
200bp
 zinc_finger_protein_432_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
5287 O_BomoMSG1475_internal:A_BomoMSG_c7258_g1_i1
110bp
 multidrug_resistance-associated_protein_7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043225 F ATPase-coupled inorganic anion transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0098656 P anion transmembrane transport
5288 O_BomoMSG14760_5prime_partial:A_BomoMSG_c24924_g1_i2
313bp
 zinc_finger_protein_432_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
5289 O_BomoMSG14761_3prime_partial:A_BomoMSG_c24925_g1_i1
409bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006810 P transport
GO:0008139 F nuclear localization sequence binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
5290 O_BomoMSG14762_complete:A_BomoMSG_c24925_g1_i1
214bp
5291 O_BomoMSG14763_complete:A_BomoMSG_c24925_g1_i1
184bp
5292 O_BomoMSG14764_internal:A_BomoMSG_c24925_g1_i2
191bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
5293 O_BomoMSG14765_internal:A_BomoMSG_c24925_g1_i2
190bp
5294 O_BomoMSG14766_5prime_partial:A_BomoMSG_c24925_g1_i2
118bp
5295 O_BomoMSG14767_complete:A_BomoMSG_c24927_g1_i1
840bp
 non-lysosomal_glucosylceramidase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004348 F glucosylceramidase activity
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0008152 P metabolic process
GO:0008206 P bile acid metabolic process
GO:0008422 F beta-glucosidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016139 P glycoside catabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
5296 O_BomoMSG14768_complete:A_BomoMSG_c24927_g1_i1
124bp
5297 O_BomoMSG14769_5prime_partial:A_BomoMSG_c24927_g1_i3
851bp
 non-lysosomal_glucosylceramidase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004348 F glucosylceramidase activity
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0008152 P metabolic process
GO:0008206 P bile acid metabolic process
GO:0008422 F beta-glucosidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016139 P glycoside catabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
5298 O_BomoMSG1476_internal:A_BomoMSG_c7264_g1_i1
118bp
 PREDICTED:_neurobeachin-like_[Papilio_xuthus]
GO:0005737 C cytoplasm
GO:0007528 P neuromuscular junction development
GO:0007614 P short-term memory
GO:0008104 P protein localization
GO:0008355 P olfactory learning
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016319 P mushroom body development
GO:0042462 P eye photoreceptor cell development
GO:0042675 P compound eye cone cell differentiation
GO:0043025 C neuronal cell body
GO:0043204 C perikaryon
GO:0051018 F protein kinase A binding
5299 O_BomoMSG14770_complete:A_BomoMSG_c24927_g1_i3
124bp
5300 O_BomoMSG14771_5prime_partial:A_BomoMSG_c24928_g1_i1
111bp
 ruvB-like_helicase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000812 C Swr1 complex
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007283 P spermatogenesis
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031011 C Ino80 complex
GO:0032508 P DNA duplex unwinding
GO:0034080 P CENP-A containing chromatin assembly
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0040008 P regulation of growth
GO:0043231 C intracellular membrane-bounded organelle
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
GO:0051301 P cell division
GO:0070062 C extracellular exosome
GO:0071339 C MLL1 complex
GO:0097255 C R2TP complex
GO:1903146 P regulation of autophagy of mitochondrion
GO:1903955 P positive regulation of protein targeting to mitochondrion
GO:1904837 P beta-catenin-TCF complex assembly
GO:1904874 P positive regulation of telomerase RNA localization to Cajal body
5301 O_BomoMSG14772_complete:A_BomoMSG_c24928_g1_i2
457bp
 ruvB-like_helicase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003678 F DNA helicase activity
GO:0003713 F transcription coactivator activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0030111 P regulation of Wnt signaling pathway
GO:0031011 C Ino80 complex
GO:0032508 P DNA duplex unwinding
GO:0042127 P regulation of cell population proliferation
GO:0043141 F 5'-3' DNA helicase activity
GO:0051301 P cell division
5302 O_BomoMSG14773_3prime_partial:A_BomoMSG_c24929_g1_i1
169bp
 jmjC_domain-containing_protein_4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
5303 O_BomoMSG14774_internal:A_BomoMSG_c24929_g1_i2
316bp
 PREDICTED:_jmjC_domain-containing_protein_4_isoform_X1_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
5304 O_BomoMSG14775_complete:A_BomoMSG_c24930_g1_i1
320bp
 partitioning_defective_protein_6_[Bombyx_mori]
GO:0005080 F protein kinase C binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005923 C bicellular tight junction
GO:0005938 C cell cortex
GO:0007049 P cell cycle
GO:0007155 P cell adhesion
GO:0007163 P establishment or maintenance of cell polarity
GO:0007275 P multicellular organism development
GO:0007338 P single fertilization
GO:0007369 P gastrulation
GO:0007506 P gonadal mesoderm development
GO:0008406 P gonad development
GO:0009949 P polarity specification of anterior/posterior axis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0040001 P establishment of mitotic spindle localization
GO:0051301 P cell division
5305 O_BomoMSG14776_complete:A_BomoMSG_c24930_g1_i1
148bp
5306 O_BomoMSG14777_5prime_partial:A_BomoMSG_c24930_g1_i2
151bp
 partitioning_defective_protein_6_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005923 C bicellular tight junction
GO:0005938 C cell cortex
GO:0006461 P protein-containing complex assembly
GO:0007043 P cell-cell junction assembly
GO:0007049 P cell cycle
GO:0007163 P establishment or maintenance of cell polarity
GO:0007409 P axonogenesis
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0030334 P regulation of cell migration
GO:0043234 C protein-containing complex
GO:0045177 C apical part of cell
GO:0051301 P cell division
GO:0070062 C extracellular exosome
GO:0070830 P bicellular tight junction assembly
5307 O_BomoMSG14778_complete:A_BomoMSG_c24930_g1_i2
148bp
5308 O_BomoMSG14779_3prime_partial:A_BomoMSG_c24931_g1_i1
313bp
 probable_methyltransferase_BMT2_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016433 F rRNA (adenine) methyltransferase activity
GO:0016740 F transferase activity
GO:0031167 P rRNA methylation
GO:0032259 P methylation
5309 O_BomoMSG1477_internal:A_BomoMSG_c7268_g1_i1
117bp
5310 O_BomoMSG14780_internal:A_BomoMSG_c24931_g1_i2
142bp
 probable_methyltransferase_BMT2_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016433 F rRNA (adenine) methyltransferase activity
GO:0016740 F transferase activity
GO:0031167 P rRNA methylation
GO:0032259 P methylation
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