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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5071 O_BomoMSG14565_complete:A_BomoMSG_c24857_g1_i3
712bp
 gastrula_zinc_finger_protein_XlCGF52.1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007275 P multicellular organism development
GO:0046872 F metal ion binding
5072 O_BomoMSG14566_complete:A_BomoMSG_c24857_g1_i3
175bp
 hypothetical_protein_N320_13019,_partial_[Buceros_rhinoceros_silvestris]
5073 O_BomoMSG14567_5prime_partial:A_BomoMSG_c24857_g2_i2
262bp
 zinc_finger_protein_62_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
5074 O_BomoMSG14568_complete:A_BomoMSG_c24857_g2_i2
178bp
5075 O_BomoMSG14569_complete:A_BomoMSG_c24857_g2_i2
102bp
5076 O_BomoMSG1456_internal:A_BomoMSG_c7154_g1_i1
148bp
 LOW_QUALITY_PROTEIN:_protein_dachsous-like_[Bombyx_mori]
5077 O_BomoMSG14570_3prime_partial:A_BomoMSG_c24860_g1_i1
883bp
 structural_maintenance_of_chromosomes_protein_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007076 P mitotic chromosome condensation
GO:0030261 P chromosome condensation
GO:0046982 F protein heterodimerization activity
GO:0051276 P chromosome organization
GO:0051301 P cell division
5078 O_BomoMSG14571_5prime_partial:A_BomoMSG_c24860_g1_i1
187bp
5079 O_BomoMSG14572_complete:A_BomoMSG_c24860_g1_i1
134bp
5080 O_BomoMSG14573_complete:A_BomoMSG_c24860_g1_i1
106bp
 nucleoporin_[Culex_quinquefasciatus]
5081 O_BomoMSG14574_complete:A_BomoMSG_c24861_g1_i1
517bp
 H+_transporting_ATP_synthase_beta_subunit_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000275 C mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005811 C lipid droplet
GO:0006754 P ATP biosynthetic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0010906 P regulation of glucose metabolic process
GO:0015986 P ATP synthesis coupled proton transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0016820 F ATPase-coupled transmembrane transporter activity
GO:0033178 C proton-transporting two-sector ATPase complex, catalytic domain
GO:0045261 C proton-transporting ATP synthase complex, catalytic core F(1)
GO:0046034 P ATP metabolic process
GO:0046331 P lateral inhibition
GO:0046933 F proton-transporting ATP synthase activity, rotational mechanism
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
5082 O_BomoMSG14575_complete:A_BomoMSG_c24861_g1_i1
108bp
 conserved_hypothetical_protein_[Mesorhizobium_plurifarium]
5083 O_BomoMSG14576_internal:A_BomoMSG_c24862_g1_i1
119bp
 uncharacterized_protein_LOC101743046_[Bombyx_mori]
5084 O_BomoMSG14577_3prime_partial:A_BomoMSG_c24862_g1_i2
274bp
 uncharacterized_protein_LOC101743046_[Bombyx_mori]
5085 O_BomoMSG14578_5prime_partial:A_BomoMSG_c24863_g1_i1
483bp
 coiled-coil_domain-containing_protein_93_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0015031 P protein transport
5086 O_BomoMSG14579_5prime_partial:A_BomoMSG_c24863_g1_i2
193bp
 coiled-coil_domain-containing_protein_93_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0015031 P protein transport
5087 O_BomoMSG1457_3prime_partial:A_BomoMSG_c7154_g1_i1
109bp
5088 O_BomoMSG14580_5prime_partial:A_BomoMSG_c24863_g1_i3
528bp
 coiled-coil_domain-containing_protein_93_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0015031 P protein transport
5089 O_BomoMSG14581_3prime_partial:A_BomoMSG_c24865_g1_i2
431bp
 cactin,_partial_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0006952 P defense response
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0009950 P dorsal/ventral axis specification
GO:0022008 P neurogenesis
GO:0044822 F RNA binding
GO:0048812 P neuron projection morphogenesis
GO:0071013 C catalytic step 2 spliceosome
5090 O_BomoMSG14582_5prime_partial:A_BomoMSG_c24865_g1_i2
162bp
5091 O_BomoMSG14583_5prime_partial:A_BomoMSG_c24866_g1_i1
257bp
 dolichyldiphosphatase_1-like_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0047874 F dolichyldiphosphatase activity
5092 O_BomoMSG14584_5prime_partial:A_BomoMSG_c24866_g1_i1
103bp
5093 O_BomoMSG14585_complete:A_BomoMSG_c24866_g1_i2
252bp
 dolichyldiphosphatase_1-like_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0047874 F dolichyldiphosphatase activity
5094 O_BomoMSG14586_5prime_partial:A_BomoMSG_c24866_g1_i2
103bp
5095 O_BomoMSG14587_complete:A_BomoMSG_c24868_g1_i1
559bp
 low-density_lipoprotein_receptor-related_protein_2_isoform_X3_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006605 P protein targeting
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0014910 P regulation of smooth muscle cell migration
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034362 C low-density lipoprotein particle
5096 O_BomoMSG14588_complete:A_BomoMSG_c24868_g1_i1
113bp
5097 O_BomoMSG14589_internal:A_BomoMSG_c24870_g1_i2
461bp
 protein_angel_[Bombyx_mori]
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0015030 C Cajal body
GO:0045930 P negative regulation of mitotic cell cycle
GO:0070935 P 3'-UTR-mediated mRNA stabilization
5098 O_BomoMSG1458_internal:A_BomoMSG_c7156_g1_i1
129bp
 E3_ubiquitin-protein_ligase_UBR4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005856 C cytoskeleton
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
5099 O_BomoMSG14590_5prime_partial:A_BomoMSG_c24871_g1_i1
306bp
 membrane-bound_transcription_factor_site-2_protease_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006629 P lipid metabolic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0031293 P membrane protein intracellular domain proteolysis
GO:0034976 P response to endoplasmic reticulum stress
GO:0046872 F metal ion binding
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:1990440 P positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress
5100 O_BomoMSG14591_3prime_partial:A_BomoMSG_c24871_g2_i1
194bp
 membrane-bound_transcription_factor_site-2_protease_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006629 P lipid metabolic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0031293 P membrane protein intracellular domain proteolysis
GO:0034976 P response to endoplasmic reticulum stress
GO:0046872 F metal ion binding
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:1990440 P positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress
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