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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4321 O_BomoMSG13890_5prime_partial:A_BomoMSG_c24555_g1_i3
825bp
 lipophorin_receptor_isoform_1_precursor_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001666 P response to hypoxia
GO:0001948 F protein binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005905 C clathrin-coated pit
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007507 P heart development
GO:0007584 P response to nutrient
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0009725 P response to hormone
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021517 P ventral spinal cord development
GO:0021987 P cerebral cortex development
GO:0030229 F very-low-density lipoprotein particle receptor activity
GO:0032496 P response to lipopolysaccharide
GO:0032869 P cellular response to insulin stimulus
GO:0034185 F apolipoprotein binding
GO:0034189 F very-low-density lipoprotein particle binding
GO:0034361 C very-low-density lipoprotein particle
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0034447 P very-low-density lipoprotein particle clearance
GO:0038025 F reelin receptor activity
GO:0038026 P reelin-mediated signaling pathway
GO:0042149 P cellular response to glucose starvation
GO:0042493 P response to xenobiotic stimulus
GO:0043235 C receptor complex
GO:0045177 C apical part of cell
GO:0045860 P positive regulation of protein kinase activity
GO:0048306 F calcium-dependent protein binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048813 P dendrite morphogenesis
GO:0071222 P cellular response to lipopolysaccharide
GO:0071347 P cellular response to interleukin-1
GO:0071456 P cellular response to hypoxia
GO:1900006 P positive regulation of dendrite development
4322 O_BomoMSG13891_5prime_partial:A_BomoMSG_c24555_g1_i3
121bp
4323 O_BomoMSG13892_3prime_partial:A_BomoMSG_c24555_g1_i3
102bp
4324 O_BomoMSG13893_5prime_partial:A_BomoMSG_c24555_g1_i4
545bp
 lipophorin_receptor_isoform_X7_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001666 P response to hypoxia
GO:0001948 F protein binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005905 C clathrin-coated pit
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007507 P heart development
GO:0007584 P response to nutrient
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0009725 P response to hormone
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021517 P ventral spinal cord development
GO:0021987 P cerebral cortex development
GO:0030229 F very-low-density lipoprotein particle receptor activity
GO:0032496 P response to lipopolysaccharide
GO:0032869 P cellular response to insulin stimulus
GO:0034185 F apolipoprotein binding
GO:0034189 F very-low-density lipoprotein particle binding
GO:0034361 C very-low-density lipoprotein particle
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0034447 P very-low-density lipoprotein particle clearance
GO:0038025 F reelin receptor activity
GO:0038026 P reelin-mediated signaling pathway
GO:0042149 P cellular response to glucose starvation
GO:0042493 P response to xenobiotic stimulus
GO:0043235 C receptor complex
GO:0045177 C apical part of cell
GO:0045860 P positive regulation of protein kinase activity
GO:0048306 F calcium-dependent protein binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048813 P dendrite morphogenesis
GO:0071222 P cellular response to lipopolysaccharide
GO:0071347 P cellular response to interleukin-1
GO:0071456 P cellular response to hypoxia
GO:1900006 P positive regulation of dendrite development
4325 O_BomoMSG13894_5prime_partial:A_BomoMSG_c24557_g1_i2
105bp
 unknown_[Glycine_max]
4326 O_BomoMSG13895_3prime_partial:A_BomoMSG_c24557_g1_i2
99bp
 PREDICTED:_tubulin_beta_chain-like_isoform_X1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007507 P heart development
GO:0008152 P metabolic process
GO:0009416 P response to light stimulus
GO:0022008 P neurogenesis
GO:0030537 P larval behavior
GO:0045298 C tubulin complex
4327 O_BomoMSG13896_5prime_partial:A_BomoMSG_c24557_g2_i1
432bp
 PREDICTED:_tubulin_beta-1_chain_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
4328 O_BomoMSG13897_complete:A_BomoMSG_c24557_g2_i1
109bp
 hypothetical_protein_N320_00021,_partial_[Buceros_rhinoceros_silvestris]
4329 O_BomoMSG13898_complete:A_BomoMSG_c24557_g2_i1
106bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC108870455_[Brassica_rapa]
4330 O_BomoMSG13899_5prime_partial:A_BomoMSG_c24557_g2_i1
101bp
 putative_tubulin_beta_2_[Taeniopygia_guttata]
4331 O_BomoMSG1389_internal:A_BomoMSG_c6406_g1_i1
226bp
 protein_SMG8_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003674 F molecular_function
GO:0005575 C cellular_component
4332 O_BomoMSG138_5prime_partial:A_BomoMSG_c503_g1_i1
116bp
 disks_large_homolog_5_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0006461 P protein-containing complex assembly
GO:0007165 P signal transduction
GO:0008013 F beta-catenin binding
GO:0008092 F cytoskeletal protein binding
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0016337 P cell-cell adhesion
GO:0030054 C cell junction
GO:0030159 F signaling receptor complex adaptor activity
GO:0030859 P polarized epithelial cell differentiation
GO:0030901 P midbrain development
GO:0035556 P intracellular signal transduction
GO:0042981 P regulation of apoptotic process
GO:0045176 P apical protein localization
GO:0045186 P zonula adherens assembly
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0060441 P epithelial tube branching involved in lung morphogenesis
GO:0071896 P protein localization to adherens junction
GO:0072205 P metanephric collecting duct development
4333 O_BomoMSG13900_complete:A_BomoMSG_c24557_g2_i2
448bp
 beta-tubulin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
4334 O_BomoMSG13901_complete:A_BomoMSG_c24557_g2_i2
106bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC108870455_[Brassica_rapa]
4335 O_BomoMSG13902_complete:A_BomoMSG_c24557_g2_i3
448bp
 beta-tubulin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
4336 O_BomoMSG13903_complete:A_BomoMSG_c24557_g2_i3
109bp
 hypothetical_protein_N320_00021,_partial_[Buceros_rhinoceros_silvestris]
4337 O_BomoMSG13904_complete:A_BomoMSG_c24557_g2_i3
106bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC108870455_[Brassica_rapa]
4338 O_BomoMSG13905_3prime_partial:A_BomoMSG_c24558_g1_i2
398bp
 extra_sex_combs_[Bombyx_mori]
GO:0001739 C sex chromatin
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006349 P regulation of gene expression by genomic imprinting
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0035098 C ESC/E(Z) complex
GO:0042054 F histone methyltransferase activity
GO:0042802 F identical protein binding
GO:0045120 C pronucleus
GO:0061087 P positive regulation of histone H3-K27 methylation
4339 O_BomoMSG13906_3prime_partial:A_BomoMSG_c24559_g1_i1
398bp
 E3_ubiquitin-protein_ligase_AMFR_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0000838 C Hrd1p ubiquitin ligase ERAD-M complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0004872 F signaling receptor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005887 C integral component of plasma membrane
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007568 P aging
GO:0007611 P learning or memory
GO:0008270 F zinc ion binding
GO:0009987 P cellular process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030674 F protein-macromolecule adaptor activity
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0032092 P positive regulation of protein binding
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0036513 C Derlin-1 retrotranslocation complex
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043025 C neuronal cell body
GO:0043234 C protein-containing complex
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051087 F chaperone binding
GO:0051259 P protein complex oligomerization
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070936 P protein K48-linked ubiquitination
GO:1904264 F ubiquitin protein ligase activity
GO:1904288 F BAT3 complex binding
GO:1990381 F ubiquitin-specific protease binding
4340 O_BomoMSG13907_complete:A_BomoMSG_c24559_g1_i1
153bp
4341 O_BomoMSG13908_complete:A_BomoMSG_c24559_g1_i1
107bp
4342 O_BomoMSG13909_complete:A_BomoMSG_c24559_g1_i2
397bp
 E3_ubiquitin-protein_ligase_AMFR_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0000838 C Hrd1p ubiquitin ligase ERAD-M complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0004872 F signaling receptor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005887 C integral component of plasma membrane
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007568 P aging
GO:0007611 P learning or memory
GO:0008270 F zinc ion binding
GO:0009987 P cellular process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030674 F protein-macromolecule adaptor activity
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0032092 P positive regulation of protein binding
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0036513 C Derlin-1 retrotranslocation complex
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043025 C neuronal cell body
GO:0043234 C protein-containing complex
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051087 F chaperone binding
GO:0051259 P protein complex oligomerization
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070936 P protein K48-linked ubiquitination
GO:1904264 F ubiquitin protein ligase activity
GO:1904288 F BAT3 complex binding
GO:1990381 F ubiquitin-specific protease binding
4343 O_BomoMSG1390_5prime_partial:A_BomoMSG_c6410_g1_i1
111bp
 DNA_N6-methyl_adenine_demethylase_isoform_X5_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007281 P germ cell development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0035511 P oxidative DNA demethylation
GO:0035514 F DNA demethylase activity
GO:0035516 F oxidative DNA demethylase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:1901537 P positive regulation of DNA demethylation
4344 O_BomoMSG13910_complete:A_BomoMSG_c24559_g1_i2
153bp
4345 O_BomoMSG13911_complete:A_BomoMSG_c24559_g1_i2
107bp
4346 O_BomoMSG13912_3prime_partial:A_BomoMSG_c24560_g1_i1
171bp
 mitochondrial_ribosomal_protein_S10_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0008150 P biological_process
GO:0019233 P sensory perception of pain
GO:0030529 C ribonucleoprotein complex
4347 O_BomoMSG13913_3prime_partial:A_BomoMSG_c24561_g1_i1
598bp
 uncharacterized_protein_LOC101736218_isoform_X1_[Bombyx_mori]
4348 O_BomoMSG13914_3prime_partial:A_BomoMSG_c24562_g1_i1
355bp
 LOW_QUALITY_PROTEIN:_probable_protein_phosphatase_2C_20_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0003824 F catalytic activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006470 P protein dephosphorylation
GO:0007049 P cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0009267 P cellular response to starvation
GO:0009314 P response to radiation
GO:0009617 P response to bacterium
GO:0016787 F hydrolase activity
GO:0035970 P peptidyl-threonine dephosphorylation
GO:0043169 F cation binding
GO:0046872 F metal ion binding
GO:0051019 F mitogen-activated protein kinase binding
4349 O_BomoMSG13915_5prime_partial:A_BomoMSG_c24563_g1_i1
307bp
 aladin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007077 P mitotic nuclear membrane disassembly
GO:0007612 P learning
GO:0009566 P fertilization
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031965 C nuclear membrane
GO:0046822 P regulation of nucleocytoplasmic transport
GO:0051028 P mRNA transport
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
4350 O_BomoMSG13916_5prime_partial:A_BomoMSG_c24563_g1_i1
115bp
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