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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3961 O_BomoMSG13566_5prime_partial:A_BomoMSG_c24406_g1_i3
117bp
3962 O_BomoMSG13567_internal:A_BomoMSG_c24407_g1_i1
263bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X4_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
3963 O_BomoMSG13568_complete:A_BomoMSG_c24407_g1_i2
103bp
 PREDICTED:_uncharacterized_protein_LOC108759265_[Trachymyrmex_cornetzi]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
3964 O_BomoMSG13569_internal:A_BomoMSG_c24407_g1_i4
107bp
 pol_protein_[Danaus_plexippus_plexippus]
3965 O_BomoMSG1356_internal:A_BomoMSG_c6191_g1_i1
119bp
 collagen-like_protein_[Paenibacillus_assamensis]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
3966 O_BomoMSG13570_internal:A_BomoMSG_c24407_g1_i5
145bp
 hypothetical_protein_RR46_01242_[Papilio_xuthus]
3967 O_BomoMSG13571_5prime_partial:A_BomoMSG_c24407_g1_i6
208bp
 putative_pol-like_protein_[Operophtera_brumata]
3968 O_BomoMSG13572_complete:A_BomoMSG_c24407_g1_i6
162bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Trachymyrmex_cornetzi]
3969 O_BomoMSG13573_complete:A_BomoMSG_c24407_g1_i7
103bp
 PREDICTED:_uncharacterized_protein_LOC108759265_[Trachymyrmex_cornetzi]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
3970 O_BomoMSG13574_internal:A_BomoMSG_c24408_g1_i1
448bp
 putative_nuclease_HARBI1_[Bombyx_mori]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3971 O_BomoMSG13575_5prime_partial:A_BomoMSG_c24408_g1_i1
137bp
3972 O_BomoMSG13576_internal:A_BomoMSG_c24408_g1_i2
369bp
 putative_nuclease_HARBI1_[Bombyx_mori]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3973 O_BomoMSG13577_5prime_partial:A_BomoMSG_c24408_g1_i2
137bp
3974 O_BomoMSG13578_internal:A_BomoMSG_c24408_g1_i3
347bp
 putative_nuclease_HARBI1_[Bombyx_mori]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3975 O_BomoMSG13579_5prime_partial:A_BomoMSG_c24408_g1_i3
137bp
3976 O_BomoMSG1357_internal:A_BomoMSG_c6191_g1_i1
119bp
 LOW_QUALITY_PROTEIN:_collagen_alpha-1(I)_chain_[Bombyx_mori]
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0046872 F metal ion binding
3977 O_BomoMSG13580_5prime_partial:A_BomoMSG_c24409_g1_i1
296bp
 E3_ubiquitin-protein_ligase_Arkadia_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007409 P axonogenesis
GO:0008045 P motor neuron axon guidance
GO:0008270 F zinc ion binding
GO:0010259 P multicellular organism aging
GO:0030163 P protein catabolic process
GO:0030513 P positive regulation of BMP signaling pathway
GO:0035136 P forelimb morphogenesis
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043234 C protein-containing complex
GO:0046872 F metal ion binding
GO:0060173 P limb development
GO:0060384 P innervation
GO:0061061 P muscle structure development
GO:0061630 F ubiquitin protein ligase activity
3978 O_BomoMSG13581_5prime_partial:A_BomoMSG_c24409_g1_i1
114bp
3979 O_BomoMSG13582_complete:A_BomoMSG_c24409_g1_i1
106bp
3980 O_BomoMSG13583_5prime_partial:A_BomoMSG_c24409_g1_i2
272bp
 E3_ubiquitin-protein_ligase_Arkadia_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007409 P axonogenesis
GO:0008045 P motor neuron axon guidance
GO:0008270 F zinc ion binding
GO:0010259 P multicellular organism aging
GO:0030163 P protein catabolic process
GO:0030513 P positive regulation of BMP signaling pathway
GO:0035136 P forelimb morphogenesis
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043234 C protein-containing complex
GO:0046872 F metal ion binding
GO:0060173 P limb development
GO:0060384 P innervation
GO:0061061 P muscle structure development
GO:0061630 F ubiquitin protein ligase activity
3981 O_BomoMSG13584_complete:A_BomoMSG_c24409_g1_i2
106bp
3982 O_BomoMSG13585_5prime_partial:A_BomoMSG_c24410_g1_i2
418bp
 uncharacterized_protein_LOC101737106_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003993 F acid phosphatase activity
GO:0005794 C Golgi apparatus
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0010909 P positive regulation of heparan sulfate proteoglycan biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0050650 P chondroitin sulfate proteoglycan biosynthetic process
3983 O_BomoMSG13586_complete:A_BomoMSG_c24411_g1_i1
276bp
 DNA-directed_RNA_polymerase_II_polypeptide_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005665 C RNA polymerase II, core complex
GO:0005737 C cytoplasm
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006370 P 7-methylguanosine mRNA capping
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0010467 P gene expression
GO:0015630 C microtubule cytoskeleton
GO:0031047 P gene silencing by RNA
GO:0035019 P somatic stem cell population maintenance
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
GO:0050434 P positive regulation of viral transcription
3984 O_BomoMSG13587_5prime_partial:A_BomoMSG_c24412_g1_i1
431bp
 E3_ubiquitin-protein_ligase_Nedd-4_isoform_X4_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0004842 F ubiquitin-protein transferase activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007528 P neuromuscular junction development
GO:0016199 P axon midline choice point recognition
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0017022 F myosin binding
GO:0019904 F protein domain specific binding
GO:0031623 P receptor internalization
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045746 P negative regulation of Notch signaling pathway
GO:0045807 P positive regulation of endocytosis
GO:0051965 P positive regulation of synapse assembly
GO:0061630 F ubiquitin protein ligase activity
3985 O_BomoMSG13588_complete:A_BomoMSG_c24412_g1_i1
102bp
3986 O_BomoMSG13589_5prime_partial:A_BomoMSG_c24412_g1_i2
118bp
3987 O_BomoMSG1358_3prime_partial:A_BomoMSG_c6208_g1_i1
240bp
 FGFR1_oncogene_partner-like_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0034453 P microtubule anchoring
3988 O_BomoMSG13590_5prime_partial:A_BomoMSG_c24412_g1_i2
109bp
 PREDICTED:_E3_ubiquitin-protein_ligase_Nedd-4-like_[Ceratina_calcarata]
GO:0002092 P positive regulation of receptor internalization
GO:0004842 F ubiquitin-protein transferase activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007528 P neuromuscular junction development
GO:0016199 P axon midline choice point recognition
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0017022 F myosin binding
GO:0019904 F protein domain specific binding
GO:0031623 P receptor internalization
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045746 P negative regulation of Notch signaling pathway
GO:0045807 P positive regulation of endocytosis
GO:0051965 P positive regulation of synapse assembly
GO:0061630 F ubiquitin protein ligase activity
3989 O_BomoMSG13591_5prime_partial:A_BomoMSG_c24412_g1_i3
134bp
 PREDICTED:_E3_ubiquitin-protein_ligase_Nedd-4-like_[Ceratina_calcarata]
GO:0002092 P positive regulation of receptor internalization
GO:0004842 F ubiquitin-protein transferase activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007528 P neuromuscular junction development
GO:0016199 P axon midline choice point recognition
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0017022 F myosin binding
GO:0019904 F protein domain specific binding
GO:0031623 P receptor internalization
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045746 P negative regulation of Notch signaling pathway
GO:0045807 P positive regulation of endocytosis
GO:0051965 P positive regulation of synapse assembly
GO:0061630 F ubiquitin protein ligase activity
3990 O_BomoMSG13592_5prime_partial:A_BomoMSG_c24412_g1_i4
392bp
 E3_ubiquitin-protein_ligase_Nedd-4_isoform_X5_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0004842 F ubiquitin-protein transferase activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007528 P neuromuscular junction development
GO:0016199 P axon midline choice point recognition
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0017022 F myosin binding
GO:0019904 F protein domain specific binding
GO:0031623 P receptor internalization
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045746 P negative regulation of Notch signaling pathway
GO:0045807 P positive regulation of endocytosis
GO:0051965 P positive regulation of synapse assembly
GO:0061630 F ubiquitin protein ligase activity
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