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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3661 O_BomoMSG13296_internal:A_BomoMSG_c24272_g1_i1
219bp
 uncharacterized_protein_LOC110386341_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
3662 O_BomoMSG13297_internal:A_BomoMSG_c24274_g1_i1
317bp
 vascular_endothelial_growth_factor_receptor_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000186 P obsolete activation of MAPKK activity
GO:0001525 P angiogenesis
GO:0001666 P response to hypoxia
GO:0002548 P monocyte chemotaxis
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005021 F vascular endothelial growth factor-activated receptor activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0006468 P protein phosphorylation
GO:0006935 P chemotaxis
GO:0006940 P regulation of smooth muscle contraction
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0008284 P positive regulation of cell population proliferation
GO:0010863 P positive regulation of phospholipase C activity
GO:0014068 P positive regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019838 F growth factor binding
GO:0030154 P cell differentiation
GO:0030335 P positive regulation of cell migration
GO:0030522 P intracellular receptor signaling pathway
GO:0030949 P positive regulation of vascular endothelial growth factor receptor signaling pathway
GO:0035924 P cellular response to vascular endothelial growth factor stimulus
GO:0036323 P vascular endothelial growth factor receptor-1 signaling pathway
GO:0036326 F vascular endothelial growth factor-activated receptor activity
GO:0036327 F vascular endothelial growth factor-activated receptor activity
GO:0036332 F placental growth factor-activated receptor activity
GO:0038084 P vascular endothelial growth factor signaling pathway
GO:0043235 C receptor complex
GO:0043406 P positive regulation of MAP kinase activity
GO:0043410 P positive regulation of MAPK cascade
GO:0043552 P positive regulation of phosphatidylinositol 3-kinase activity
GO:0045766 P positive regulation of angiogenesis
GO:0046777 P protein autophosphorylation
GO:0048010 P vascular endothelial growth factor receptor signaling pathway
GO:0048514 P blood vessel morphogenesis
GO:0048598 P embryonic morphogenesis
GO:0048661 P positive regulation of smooth muscle cell proliferation
3663 O_BomoMSG13298_internal:A_BomoMSG_c24274_g1_i2
553bp
 vascular_endothelial_growth_factor_receptor_1_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000186 P obsolete activation of MAPKK activity
GO:0001525 P angiogenesis
GO:0001666 P response to hypoxia
GO:0002548 P monocyte chemotaxis
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005021 F vascular endothelial growth factor-activated receptor activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0006468 P protein phosphorylation
GO:0006935 P chemotaxis
GO:0006940 P regulation of smooth muscle contraction
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0008284 P positive regulation of cell population proliferation
GO:0010863 P positive regulation of phospholipase C activity
GO:0014068 P positive regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019838 F growth factor binding
GO:0030154 P cell differentiation
GO:0030335 P positive regulation of cell migration
GO:0030522 P intracellular receptor signaling pathway
GO:0030949 P positive regulation of vascular endothelial growth factor receptor signaling pathway
GO:0035924 P cellular response to vascular endothelial growth factor stimulus
GO:0036323 P vascular endothelial growth factor receptor-1 signaling pathway
GO:0036326 F vascular endothelial growth factor-activated receptor activity
GO:0036327 F vascular endothelial growth factor-activated receptor activity
GO:0036332 F placental growth factor-activated receptor activity
GO:0038084 P vascular endothelial growth factor signaling pathway
GO:0043235 C receptor complex
GO:0043406 P positive regulation of MAP kinase activity
GO:0043410 P positive regulation of MAPK cascade
GO:0043552 P positive regulation of phosphatidylinositol 3-kinase activity
GO:0045766 P positive regulation of angiogenesis
GO:0046777 P protein autophosphorylation
GO:0048010 P vascular endothelial growth factor receptor signaling pathway
GO:0048514 P blood vessel morphogenesis
GO:0048598 P embryonic morphogenesis
GO:0048661 P positive regulation of smooth muscle cell proliferation
3664 O_BomoMSG13299_3prime_partial:A_BomoMSG_c24275_g2_i1
143bp
 histone_chaperone_asf1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001103 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006325 P chromatin organization
GO:0006333 P chromatin assembly or disassembly
GO:0006334 P nucleosome assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007517 P muscle organ development
GO:0016568 P chromatin organization
GO:0017053 C transcription repressor complex
GO:0033186 C CAF-1 complex
GO:0035059 C RCAF complex
GO:0045746 P negative regulation of Notch signaling pathway
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0048813 P dendrite morphogenesis
3665 O_BomoMSG1329_5prime_partial:A_BomoMSG_c6096_g1_i1
163bp
 uncharacterized_protein_LOC105842714_[Bombyx_mori]
3666 O_BomoMSG132_internal:A_BomoMSG_c490_g1_i1
122bp
 solute_carrier_family_12_member_9_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
3667 O_BomoMSG13300_internal:A_BomoMSG_c24276_g1_i1
171bp
 E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
3668 O_BomoMSG13301_internal:A_BomoMSG_c24276_g1_i2
146bp
 E3_ubiquitin-protein_ligase_TRIP12_isoform_X3_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
3669 O_BomoMSG13302_5prime_partial:A_BomoMSG_c24277_g1_i1
300bp
 probable_methyltransferase-like_protein_15_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0070475 P rRNA base methylation
GO:0071424 F rRNA (cytosine-N4-)-methyltransferase activity
3670 O_BomoMSG13303_5prime_partial:A_BomoMSG_c24279_g1_i1
161bp
 uncharacterized_protein_C15orf41_homolog_isoform_X2_[Bombyx_mori]
3671 O_BomoMSG13304_complete:A_BomoMSG_c24279_g1_i2
288bp
 uncharacterized_protein_C15orf41_homolog_isoform_X1_[Bombyx_mori]
3672 O_BomoMSG13305_complete:A_BomoMSG_c24280_g1_i1
496bp
 probable_G-protein_coupled_receptor_Mth-like_5_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0008340 P determination of adult lifespan
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042594 P response to starvation
3673 O_BomoMSG13306_complete:A_BomoMSG_c24280_g1_i3
327bp
 probable_G-protein_coupled_receptor_Mth-like_5_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0008340 P determination of adult lifespan
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042594 P response to starvation
3674 O_BomoMSG13307_complete:A_BomoMSG_c24281_g2_i1
406bp
 protein_farnesyltransferase_subunit_beta_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004311 F farnesyltranstransferase activity
GO:0004659 F prenyltransferase activity
GO:0004660 F protein farnesyltransferase activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0005875 C microtubule associated complex
GO:0005965 C protein farnesyltransferase complex
GO:0008144 F obsolete drug binding
GO:0008270 F zinc ion binding
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010035 P response to inorganic substance
GO:0014070 P response to organic cyclic compound
GO:0016740 F transferase activity
GO:0018343 P protein farnesylation
GO:0019840 F isoprenoid binding
GO:0022400 P regulation of rhodopsin mediated signaling pathway
GO:0034097 P response to cytokine
GO:0042060 P wound healing
GO:0042127 P regulation of cell population proliferation
GO:0042277 F peptide binding
GO:0043234 C protein-containing complex
GO:0045787 P positive regulation of cell cycle
GO:0046872 F metal ion binding
GO:0048146 P positive regulation of fibroblast proliferation
GO:0051770 P positive regulation of nitric-oxide synthase biosynthetic process
3675 O_BomoMSG13308_internal:A_BomoMSG_c24282_g1_i1
148bp
 DNA-directed_RNA_polymerase_III_subunit_RPC3_isoform_X1_[Bombyx_mori]
GO:0001056 F RNA polymerase III activity
GO:0002376 P immune system process
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005666 C RNA polymerase III complex
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006359 P regulation of transcription by RNA polymerase III
GO:0006383 P transcription by RNA polymerase III
GO:0032481 P positive regulation of type I interferon production
GO:0032728 P positive regulation of interferon-beta production
GO:0045087 P innate immune response
GO:0045089 P positive regulation of innate immune response
GO:0051607 P defense response to virus
3676 O_BomoMSG13309_5prime_partial:A_BomoMSG_c24283_g1_i1
145bp
 nuclear_pore_complex_protein_Nup85_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006935 P chemotaxis
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0030032 P lamellipodium assembly
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048246 P macrophage chemotaxis
GO:0051028 P mRNA transport
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
3677 O_BomoMSG1330_3prime_partial:A_BomoMSG_c6106_g1_i1
137bp
 zinc_finger_protein_Xfin_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
3678 O_BomoMSG13310_3prime_partial:A_BomoMSG_c24284_g1_i1
277bp
 tribbles_homolog_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004860 F protein kinase inhibitor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006468 P protein phosphorylation
GO:0006469 P negative regulation of protein kinase activity
GO:0008134 F transcription factor binding
GO:0031434 F mitogen-activated protein kinase kinase binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043405 P regulation of MAP kinase activity
GO:0045081 P negative regulation of interleukin-10 production
GO:0045599 P negative regulation of fat cell differentiation
GO:0055106 F ubiquitin-protein transferase regulator activity
3679 O_BomoMSG13311_internal:A_BomoMSG_c24285_g1_i1
120bp
 RNA_polymerase-associated_protein_Rtf1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007219 P Notch signaling pathway
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0035327 C euchromatin
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051568 P histone H3-K4 methylation
GO:0051571 P positive regulation of histone H3-K4 methylation
3680 O_BomoMSG13312_5prime_partial:A_BomoMSG_c24285_g1_i1
101bp
3681 O_BomoMSG13313_internal:A_BomoMSG_c24285_g1_i2
496bp
 RNA_polymerase-associated_protein_Rtf1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007219 P Notch signaling pathway
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0035327 C euchromatin
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051568 P histone H3-K4 methylation
GO:0051571 P positive regulation of histone H3-K4 methylation
3682 O_BomoMSG13314_5prime_partial:A_BomoMSG_c24285_g1_i2
101bp
3683 O_BomoMSG13315_complete:A_BomoMSG_c24286_g1_i1
114bp
3684 O_BomoMSG13316_3prime_partial:A_BomoMSG_c24288_g1_i1
158bp
 PREDICTED:_lethal(2)neighbour_of_tid_protein_2-like_[Plutella_xylostella]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016758 F hexosyltransferase activity
3685 O_BomoMSG13317_internal:A_BomoMSG_c24289_g1_i1
303bp
 endothelial_zinc_finger_protein_induced_by_tumor_necrosis_factor_alpha-like_[Bombyx_mori]
3686 O_BomoMSG13318_complete:A_BomoMSG_c24291_g1_i2
127bp
 putative_peptidyl-tRNA_hydrolase_PTRHD1_[Bombyx_mori]
GO:0004045 F aminoacyl-tRNA hydrolase activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0070062 C extracellular exosome
3687 O_BomoMSG13319_internal:A_BomoMSG_c24293_g1_i1
119bp
 PREDICTED:_uncharacterized_protein_LOC105389804_isoform_X3_[Plutella_xylostella]
3688 O_BomoMSG1331_internal:A_BomoMSG_c6108_g1_i1
149bp
 protein_unc-80_homolog_[Bombyx_mori]
GO:0005261 F cation channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034703 C cation channel complex
GO:0045475 P locomotor rhythm
GO:0055080 P cation homeostasis
GO:0098655 P cation transmembrane transport
3689 O_BomoMSG13320_5prime_partial:A_BomoMSG_c24293_g2_i1
293bp
 uncharacterized_protein_LOC110380377_isoform_X6_[Helicoverpa_armigera]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
3690 O_BomoMSG13321_complete:A_BomoMSG_c24293_g2_i1
101bp
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