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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3391 O_BomoMSG13052_complete:A_BomoMSG_c24159_g1_i3
657bp
 cytoplasmic_dynein_1_intermediate_chain_isoform_X15_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0001754 P eye photoreceptor cell differentiation
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005868 C cytoplasmic dynein complex
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0006810 P transport
GO:0007018 P microtubule-based movement
GO:0007051 P spindle organization
GO:0007291 P sperm individualization
GO:0007349 P cellularization
GO:0008088 P axo-dendritic transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016482 P cytosolic transport
GO:0030286 C dynein complex
GO:0031965 C nuclear membrane
GO:0034501 P protein localization to kinetochore
GO:0043005 C neuron projection
GO:0045503 F dynein light chain binding
GO:0045504 F dynein heavy chain binding
GO:0051642 P centrosome localization
GO:0070840 F dynein complex binding
3392 O_BomoMSG13053_complete:A_BomoMSG_c24159_g1_i3
168bp
 cytoplasmic_dynein_1_intermediate_chain_isoform_X20_[Bombyx_mori]
3393 O_BomoMSG13054_complete:A_BomoMSG_c24159_g1_i3
166bp
3394 O_BomoMSG13055_complete:A_BomoMSG_c24159_g1_i4
662bp
 cytoplasmic_dynein_1_intermediate_chain_isoform_X14_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0001754 P eye photoreceptor cell differentiation
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005868 C cytoplasmic dynein complex
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0006810 P transport
GO:0007018 P microtubule-based movement
GO:0007051 P spindle organization
GO:0007291 P sperm individualization
GO:0007349 P cellularization
GO:0008088 P axo-dendritic transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016482 P cytosolic transport
GO:0030286 C dynein complex
GO:0031965 C nuclear membrane
GO:0034501 P protein localization to kinetochore
GO:0043005 C neuron projection
GO:0045503 F dynein light chain binding
GO:0045504 F dynein heavy chain binding
GO:0051642 P centrosome localization
GO:0070840 F dynein complex binding
3395 O_BomoMSG13056_complete:A_BomoMSG_c24159_g1_i4
168bp
 cytoplasmic_dynein_1_intermediate_chain_isoform_X20_[Bombyx_mori]
3396 O_BomoMSG13057_complete:A_BomoMSG_c24159_g1_i4
166bp
3397 O_BomoMSG13058_complete:A_BomoMSG_c24159_g1_i4
103bp
3398 O_BomoMSG13059_complete:A_BomoMSG_c24160_g1_i1
100bp
 uncharacterized_protein_LOC105841850_isoform_X2_[Bombyx_mori]
3399 O_BomoMSG1305_5prime_partial:A_BomoMSG_c5940_g1_i1
166bp
3400 O_BomoMSG13060_complete:A_BomoMSG_c24162_g1_i1
154bp
 mitochondrial_inner_membrane_protease_subunit_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004252 F serine-type endopeptidase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006465 P signal peptide processing
GO:0006508 P proteolysis
GO:0006627 P protein processing involved in protein targeting to mitochondrion
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0033108 P mitochondrial respiratory chain complex assembly
GO:0042720 C mitochondrial inner membrane peptidase complex
3401 O_BomoMSG13061_complete:A_BomoMSG_c24163_g1_i1
240bp
 protein_SDE2_homolog_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
3402 O_BomoMSG13062_3prime_partial:A_BomoMSG_c24164_g1_i1
254bp
 integrin_alpha-PS1_isoform_X1_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0007015 P actin filament organization
GO:0007155 P cell adhesion
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007160 P cell-matrix adhesion
GO:0007229 P integrin-mediated signaling pathway
GO:0007411 P axon guidance
GO:0007414 P axonal defasciculation
GO:0007424 P open tracheal system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007431 P salivary gland development
GO:0007432 P salivary gland boundary specification
GO:0007435 P salivary gland morphogenesis
GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007494 P midgut development
GO:0007608 P sensory perception of smell
GO:0008305 C integrin complex
GO:0009925 C basal plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016203 P muscle attachment
GO:0016324 C apical plasma membrane
GO:0016328 C lateral plasma membrane
GO:0016337 P cell-cell adhesion
GO:0016477 P cell migration
GO:0030154 P cell differentiation
GO:0033627 P cell adhesion mediated by integrin
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0035160 P maintenance of epithelial integrity, open tracheal system
GO:0046982 F protein heterodimerization activity
GO:0048567 P ectodermal digestive tract morphogenesis
GO:0050839 F cell adhesion molecule binding
GO:0050840 F extracellular matrix binding
3403 O_BomoMSG13063_5prime_partial:A_BomoMSG_c24166_g1_i1
106bp
3404 O_BomoMSG13064_complete:A_BomoMSG_c24167_g1_i1
222bp
 exosome_complex_component_RRP46_isoform_X1_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006401 P RNA catabolic process
GO:0016075 P rRNA catabolic process
GO:0031125 P rRNA 3'-end processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0051607 P defense response to virus
GO:0071028 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
3405 O_BomoMSG13065_complete:A_BomoMSG_c24167_g1_i2
222bp
 exosome_complex_component_RRP46_isoform_X1_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006401 P RNA catabolic process
GO:0016075 P rRNA catabolic process
GO:0031125 P rRNA 3'-end processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0051607 P defense response to virus
GO:0071028 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
3406 O_BomoMSG13066_3prime_partial:A_BomoMSG_c24168_g1_i1
219bp
 histone_deacetylase_[Culex_quinquefasciatus]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000785 C chromatin
GO:0003714 F transcription corepressor activity
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005705 C polytene chromosome interband
GO:0005737 C cytoplasm
GO:0006099 P tricarboxylic acid cycle
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007350 P blastoderm segmentation
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0008340 P determination of adult lifespan
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016580 C Sin3 complex
GO:0016581 C NuRD complex
GO:0016787 F hydrolase activity
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0022904 P respiratory electron transport chain
GO:0031523 C Myb complex
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0035065 P regulation of histone acetylation
GO:0035098 C ESC/E(Z) complex
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0050771 P negative regulation of axonogenesis
GO:0070822 C Sin3-type complex
GO:0070932 P histone H3 deacetylation
GO:0070983 P dendrite guidance
GO:2001229 P negative regulation of response to gamma radiation
3407 O_BomoMSG13067_internal:A_BomoMSG_c24168_g1_i2
117bp
 PREDICTED:_histone_deacetylase_Rpd3_isoform_X3_[Linepithema_humile]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000785 C chromatin
GO:0003714 F transcription corepressor activity
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005705 C polytene chromosome interband
GO:0005737 C cytoplasm
GO:0006099 P tricarboxylic acid cycle
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007350 P blastoderm segmentation
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0008340 P determination of adult lifespan
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016580 C Sin3 complex
GO:0016581 C NuRD complex
GO:0016787 F hydrolase activity
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0022904 P respiratory electron transport chain
GO:0031523 C Myb complex
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0035065 P regulation of histone acetylation
GO:0035098 C ESC/E(Z) complex
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0050771 P negative regulation of axonogenesis
GO:0070822 C Sin3-type complex
GO:0070932 P histone H3 deacetylation
GO:0070983 P dendrite guidance
GO:2001229 P negative regulation of response to gamma radiation
3408 O_BomoMSG13068_5prime_partial:A_BomoMSG_c24169_g1_i1
295bp
 peroxisomal_membrane_protein_PEX13_isoform_X2_[Bombyx_mori]
GO:0001561 P fatty acid alpha-oxidation
GO:0001764 P neuron migration
GO:0001967 P suckling behavior
GO:0002230 P positive regulation of defense response to virus by host
GO:0005515 F protein binding
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0006810 P transport
GO:0007626 P locomotory behavior
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016560 P protein import into peroxisome matrix, docking
GO:0021795 P cerebral cortex cell migration
GO:0043231 C intracellular membrane-bounded organelle
GO:0060152 P microtubule-based peroxisome localization
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
3409 O_BomoMSG13069_complete:A_BomoMSG_c24169_g1_i1
116bp
3410 O_BomoMSG1306_internal:A_BomoMSG_c5941_g1_i1
169bp
 importin-11,_partial_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0042991 P obsolete transcription factor import into nucleus
3411 O_BomoMSG13070_complete:A_BomoMSG_c24170_g2_i1
217bp
 Chitin_synthase_regulatory_factor_2_[Operophtera_brumata]
3412 O_BomoMSG13071_complete:A_BomoMSG_c24170_g2_i1
180bp
 Chitin_synthase_regulatory_factor_2_[Operophtera_brumata]
GO:0005628 C prospore membrane
GO:0005737 C cytoplasm
GO:0006031 P chitin biosynthetic process
GO:0008047 F enzyme activator activity
GO:0016020 C membrane
GO:0030435 P sporulation resulting in formation of a cellular spore
GO:0030437 P ascospore formation
GO:0043085 P positive regulation of catalytic activity
GO:0071555 P cell wall organization
3413 O_BomoMSG13072_complete:A_BomoMSG_c24170_g2_i2
349bp
 Chitin_synthase_regulatory_factor_2_[Operophtera_brumata]
GO:0005628 C prospore membrane
GO:0005737 C cytoplasm
GO:0006031 P chitin biosynthetic process
GO:0008047 F enzyme activator activity
GO:0016020 C membrane
GO:0030435 P sporulation resulting in formation of a cellular spore
GO:0030437 P ascospore formation
GO:0043085 P positive regulation of catalytic activity
GO:0071555 P cell wall organization
3414 O_BomoMSG13073_5prime_partial:A_BomoMSG_c24171_g1_i1
107bp
 zinc_finger_protein_26_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634 C nucleus
GO:0006342 P heterochromatin assembly
GO:0007275 P multicellular organism development
GO:0007354 P zygotic determination of anterior/posterior axis, embryo
GO:0007400 P neuroblast fate determination
GO:0007402 P ganglion mother cell fate determination
GO:0007411 P axon guidance
GO:0007419 P ventral cord development
GO:0007443 P Malpighian tubule morphogenesis
GO:0007517 P muscle organ development
GO:0010629 P negative regulation of gene expression
GO:0010906 P regulation of glucose metabolic process
GO:0035206 P regulation of hemocyte proliferation
GO:0035220 P wing disc development
GO:0035282 P segmentation
GO:0035290 P trunk segmentation
GO:0040034 P regulation of development, heterochronic
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048749 P compound eye development
GO:0061332 P Malpighian tubule bud morphogenesis
3415 O_BomoMSG13074_3prime_partial:A_BomoMSG_c24171_g2_i1
389bp
 zinc_finger_protein_26_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0017053 C transcription repressor complex
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0019827 P stem cell population maintenance
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030853 P negative regulation of granulocyte differentiation
GO:0033613 F DNA-binding transcription factor binding
GO:0034968 P histone lysine methylation
GO:0035019 P somatic stem cell population maintenance
GO:0043457 P regulation of cellular respiration
GO:0043565 F sequence-specific DNA binding
GO:0043586 P tongue development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0050872 P white fat cell differentiation
GO:0050873 P brown fat cell differentiation
GO:0060021 P roof of mouth development
GO:0090336 P positive regulation of brown fat cell differentiation
3416 O_BomoMSG13075_complete:A_BomoMSG_c24171_g2_i1
135bp
3417 O_BomoMSG13076_internal:A_BomoMSG_c24171_g2_i2
305bp
 zinc_finger_protein_26_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0001701 P in utero embryonic development
GO:0001780 P neutrophil homeostasis
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0006954 P inflammatory response
GO:0007275 P multicellular organism development
GO:0009617 P response to bacterium
GO:0009791 P post-embryonic development
GO:0016235 C aggresome
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0030900 P forebrain development
GO:0035115 P embryonic forelimb morphogenesis
GO:0035116 P embryonic hindlimb morphogenesis
GO:0042127 P regulation of cell population proliferation
GO:0042803 F protein homodimerization activity
GO:0043069 P negative regulation of programmed cell death
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046329 P negative regulation of JNK cascade
GO:0046872 F metal ion binding
GO:0051726 P regulation of cell cycle
GO:0060039 P pericardium development
GO:0071425 P hematopoietic stem cell proliferation
GO:0072001 P renal system development
GO:0090336 P positive regulation of brown fat cell differentiation
GO:0098727 P maintenance of cell number
3418 O_BomoMSG13077_3prime_partial:A_BomoMSG_c24171_g2_i3
255bp
 zinc_finger_protein_26_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0017053 C transcription repressor complex
GO:0019827 P stem cell population maintenance
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030853 P negative regulation of granulocyte differentiation
GO:0033613 F DNA-binding transcription factor binding
GO:0035019 P somatic stem cell population maintenance
GO:0043457 P regulation of cellular respiration
GO:0043565 F sequence-specific DNA binding
GO:0043586 P tongue development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0050872 P white fat cell differentiation
GO:0050873 P brown fat cell differentiation
GO:0060021 P roof of mouth development
GO:0090336 P positive regulation of brown fat cell differentiation
3419 O_BomoMSG13078_internal:A_BomoMSG_c24171_g2_i4
143bp
 zinc_finger_protein_26_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0017053 C transcription repressor complex
GO:0019827 P stem cell population maintenance
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030853 P negative regulation of granulocyte differentiation
GO:0033613 F DNA-binding transcription factor binding
GO:0035019 P somatic stem cell population maintenance
GO:0043457 P regulation of cellular respiration
GO:0043565 F sequence-specific DNA binding
GO:0043586 P tongue development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0050872 P white fat cell differentiation
GO:0050873 P brown fat cell differentiation
GO:0060021 P roof of mouth development
GO:0090336 P positive regulation of brown fat cell differentiation
3420 O_BomoMSG13079_3prime_partial:A_BomoMSG_c24172_g1_i1
419bp
 dolichol_kinase_isoform_X1_[Bombyx_mori]
GO:0004168 F dolichol kinase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0043048 P dolichyl monophosphate biosynthetic process
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