Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
31	O_BomoMSG10028_5prime_partial:A_BomoMSG_c22391_g1_i3 140bp	Bomo_Chr8
32	O_BomoMSG10029_5prime_partial:A_BomoMSG_c22393_g1_i1 132bp	Bomo_Chr17	meiosis_arrest_female_protein_1_homolog_[Bombyx_mori]
33	O_BomoMSG1002_internal:A_BomoMSG_c4653_g1_i2 103bp	Bomo_Chr19	epidermal_growth_factor_receptor_substrate_15-like_1_[Bombyx_mori]	GO:0005509 F calcium ion binding GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0005768 C endosome GO:0005829 C cytosol GO:0005886 C plasma membrane GO:0005905 C clathrin-coated pit GO:0006810 P transport GO:0006895 P Golgi to endosome transport GO:0006897 P endocytosis GO:0007173 P epidermal growth factor receptor signaling pathway GO:0008283 P cell population proliferation GO:0015031 P protein transport GO:0016020 C membrane GO:0016050 P vesicle organization GO:0016235 C aggresome GO:0017124 F SH3 domain binding GO:0019065 P receptor-mediated endocytosis of virus by host cell GO:0030122 C AP-2 adaptor complex GO:0030132 C clathrin coat of coated pit GO:0030136 C clathrin-coated vesicle GO:0031593 F polyubiquitin modification-dependent protein binding GO:0031901 C early endosome membrane GO:0032456 P endocytic recycling GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway GO:0042802 F identical protein binding GO:0043231 C intracellular membrane-bounded organelle GO:0046718 P viral entry into host cell GO:0046872 F metal ion binding GO:0048268 P clathrin coat assembly GO:0060170 C ciliary membrane
34	O_BomoMSG10030_5prime_partial:A_BomoMSG_c22393_g1_i2 100bp	Bomo_Chr17	meiosis_arrest_female_protein_1_homolog_[Bombyx_mori]
35	O_BomoMSG10031_5prime_partial:A_BomoMSG_c22398_g1_i1 302bp	Bomo_Chr13	ubiquitin-protein_ligase_E3A_isoform_X2_[Bombyx_mori]	GO:0000502 C proteasome complex GO:0001541 P ovarian follicle development GO:0003713 F transcription coactivator activity GO:0004842 F ubiquitin-protein transferase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006508 P proteolysis GO:0006511 P ubiquitin-dependent protein catabolic process GO:0007420 P brain development GO:0014068 P positive regulation of phosphatidylinositol 3-kinase signaling GO:0016032 P viral process GO:0016567 P protein ubiquitination GO:0016874 F ligase activity GO:0030521 P androgen receptor signaling pathway GO:0031398 P positive regulation of protein ubiquitination GO:0035037 P sperm entry GO:0042752 P regulation of circadian rhythm GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0046872 F metal ion binding GO:0048511 P rhythmic process GO:0051865 P protein autoubiquitination GO:0060736 P prostate gland growth GO:0061630 F ubiquitin protein ligase activity GO:0070936 P protein K48-linked ubiquitination GO:2000058 P regulation of ubiquitin-dependent protein catabolic process
36	O_BomoMSG10032_complete:A_BomoMSG_c22398_g1_i2 902bp	Bomo_Chr13	ubiquitin-protein_ligase_E3A_isoform_X2_[Bombyx_mori]	GO:0000502 C proteasome complex GO:0001541 P ovarian follicle development GO:0003713 F transcription coactivator activity GO:0004842 F ubiquitin-protein transferase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006508 P proteolysis GO:0006511 P ubiquitin-dependent protein catabolic process GO:0007420 P brain development GO:0014068 P positive regulation of phosphatidylinositol 3-kinase signaling GO:0016032 P viral process GO:0016567 P protein ubiquitination GO:0016874 F ligase activity GO:0030521 P androgen receptor signaling pathway GO:0031398 P positive regulation of protein ubiquitination GO:0035037 P sperm entry GO:0042752 P regulation of circadian rhythm GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0046872 F metal ion binding GO:0048511 P rhythmic process GO:0051865 P protein autoubiquitination GO:0060736 P prostate gland growth GO:0061630 F ubiquitin protein ligase activity GO:0070936 P protein K48-linked ubiquitination GO:2000058 P regulation of ubiquitin-dependent protein catabolic process
37	O_BomoMSG10033_3prime_partial:A_BomoMSG_c22399_g1_i1 99bp	Bomo_Chr9	transmembrane_protein_161B_[Bombyx_mori]	GO:0016020 C membrane GO:0016021 C integral component of membrane
38	O_BomoMSG10034_3prime_partial:A_BomoMSG_c22401_g1_i1 422bp	Bomo_Chr1	imaginal_disk_growth_factor_[Bombyx_mori]	GO:0003674 F molecular_function GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds GO:0004568 F chitinase activity GO:0005575 C cellular_component GO:0005576 C extracellular region GO:0005975 P carbohydrate metabolic process GO:0006032 P chitin catabolic process GO:0008150 P biological_process
39	O_BomoMSG10035_complete:A_BomoMSG_c22403_g1_i2 213bp	Bomo_Chr3	uncharacterized_protein_LOC101746935_isoform_X1_[Bombyx_mori]
40	O_BomoMSG10036_internal:A_BomoMSG_c22404_g1_i1 651bp	Bomo_Chr13	TBC_domain-containing_protein_kinase-like_protein_[Bombyx_mori]	GO:0004672 F protein kinase activity GO:0005096 F GTPase activator activity GO:0005524 F ATP binding GO:0005622 C intracellular anatomical structure GO:0006468 P protein phosphorylation GO:0006886 P intracellular protein transport GO:0012505 C endomembrane system GO:0017137 F small GTPase binding GO:0031338 P regulation of vesicle fusion GO:0090630 P activation of GTPase activity
41	O_BomoMSG10037_internal:A_BomoMSG_c22407_g1_i2 307bp	Bomo_Chr24	valine--tRNA_ligase_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0002161 F aminoacyl-tRNA editing activity GO:0004812 F aminoacyl-tRNA ligase activity GO:0004832 F valine-tRNA ligase activity GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0006412 P translation GO:0006418 P tRNA aminoacylation for protein translation GO:0006438 P valyl-tRNA aminoacylation GO:0006450 P regulation of translational fidelity GO:0016874 F ligase activity
42	O_BomoMSG10038_internal:A_BomoMSG_c22410_g1_i1 212bp	Bomo_Chr2	probable_inactive_tRNA-specific_adenosine_deaminase-like_protein_3_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0005829 C cytosol GO:0008033 P tRNA processing GO:0008270 F zinc ion binding GO:0009451 P RNA modification GO:0019239 F deaminase activity GO:0046872 F metal ion binding
43	O_BomoMSG10039_internal:A_BomoMSG_c22411_g1_i1 353bp	Bomo_Chr23	mitogen-activated_protein_kinase-binding_protein_1_isoform_X6_[Helicoverpa_armigera]
44	O_BomoMSG1003_internal:A_BomoMSG_c4653_g1_i2 103bp	Bomo_Chr19
45	O_BomoMSG10040_5prime_partial:A_BomoMSG_c22411_g1_i1 119bp	Bomo_Chr23
46	O_BomoMSG10041_5prime_partial:A_BomoMSG_c22411_g1_i1 116bp	Bomo_Chr23
47	O_BomoMSG10042_internal:A_BomoMSG_c22411_g1_i2 254bp	Bomo_Chr23	uncharacterized_protein_LOC101746620_[Bombyx_mori]
48	O_BomoMSG10043_5prime_partial:A_BomoMSG_c22411_g1_i2 116bp	Bomo_Chr23
49	O_BomoMSG10044_3prime_partial:A_BomoMSG_c22412_g1_i1 346bp	Bomo_Chr11	LOW_QUALITY_PROTEIN:_solute_carrier_family_25_member_44_[Bombyx_mori]	GO:0005739 C mitochondrion GO:0005743 C mitochondrial inner membrane GO:0006810 P transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0055085 P transmembrane transport
50	O_BomoMSG10045_5prime_partial:A_BomoMSG_c22412_g1_i1 123bp	Bomo_Chr11
51	O_BomoMSG10046_internal:A_BomoMSG_c22412_g1_i2 255bp	Bomo_Chr11	LOW_QUALITY_PROTEIN:_solute_carrier_family_25_member_44_[Bombyx_mori]	GO:0005739 C mitochondrion GO:0005743 C mitochondrial inner membrane GO:0006810 P transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0055085 P transmembrane transport
52	O_BomoMSG10047_5prime_partial:A_BomoMSG_c22412_g1_i2 123bp	Bomo_Chr11
53	O_BomoMSG10048_internal:A_BomoMSG_c22413_g1_i1 175bp	Bomo_Chr1	uncharacterized_protein_LOC101744245_[Bombyx_mori]
54	O_BomoMSG10049_internal:A_BomoMSG_c22414_g1_i1 277bp	Bomo_Chr20	uncharacterized_protein_LOC110378407_[Helicoverpa_armigera]	GO:0003964 F RNA-directed DNA polymerase activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0006278 P RNA-dependent DNA biosynthetic process GO:0008152 P metabolic process GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0016787 F hydrolase activity GO:0090305 P nucleic acid phosphodiester bond hydrolysis
55	O_BomoMSG1004_internal:A_BomoMSG_c4653_g1_i2 102bp	Bomo_Chr19
56	O_BomoMSG10050_internal:A_BomoMSG_c22414_g1_i2 173bp	Bomo_Chr20	TRAS3_[Bombyx_mori]	GO:0003964 F RNA-directed DNA polymerase activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0006278 P RNA-dependent DNA biosynthetic process GO:0008152 P metabolic process GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0016787 F hydrolase activity GO:0090305 P nucleic acid phosphodiester bond hydrolysis
57	O_BomoMSG10051_internal:A_BomoMSG_c22414_g1_i3 197bp	Bomo_Chr20	uncharacterized_protein_LOC110378407_[Helicoverpa_armigera]	GO:0003964 F RNA-directed DNA polymerase activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0006278 P RNA-dependent DNA biosynthetic process GO:0008152 P metabolic process GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0016787 F hydrolase activity GO:0090305 P nucleic acid phosphodiester bond hydrolysis
58	O_BomoMSG10052_5prime_partial:A_BomoMSG_c22415_g1_i1 621bp	Bomo_Chr23	organic_cation_transporter_protein_[Bombyx_mori]	GO:0005887 C integral component of plasma membrane GO:0006810 P transport GO:0006811 P ion transport GO:0006915 P apoptotic process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0022891 F transmembrane transporter activity GO:0055085 P transmembrane transport
59	O_BomoMSG10053_internal:A_BomoMSG_c22416_g1_i1 147bp	Bomo_Chr23	exportin-4_[Bombyx_mori]	GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006810 P transport GO:0015031 P protein transport
60	O_BomoMSG10054_internal:A_BomoMSG_c22416_g2_i1 213bp	Bomo_Chr23	exportin-4_[Bombyx_mori]	GO:0005049 F nuclear export signal receptor activity GO:0005634 C nucleus GO:0005643 C nuclear pore GO:0005737 C cytoplasm GO:0006611 P protein export from nucleus GO:0006810 P transport GO:0008536 F small GTPase binding GO:0015031 P protein transport