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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2761 O_BomoMSG12486_5prime_partial:A_BomoMSG_c23832_g1_i1
268bp
2762 O_BomoMSG12487_3prime_partial:A_BomoMSG_c23832_g1_i1
224bp
 PREDICTED:_transcriptional_regulator_ATRX_homolog_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005722 C beta-heterochromatin
GO:0006281 P DNA repair
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008347 P glial cell migration
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0032508 P DNA duplex unwinding
GO:0042585 C germinal vesicle
GO:0046328 P regulation of JNK cascade
GO:0051276 P chromosome organization
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0097193 P intrinsic apoptotic signaling pathway
2763 O_BomoMSG12488_3prime_partial:A_BomoMSG_c23832_g1_i2
287bp
 transcriptional_regulator_ATRX_homolog_isoform_X5_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005722 C beta-heterochromatin
GO:0006281 P DNA repair
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008347 P glial cell migration
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0032508 P DNA duplex unwinding
GO:0042585 C germinal vesicle
GO:0046328 P regulation of JNK cascade
GO:0051276 P chromosome organization
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0097193 P intrinsic apoptotic signaling pathway
2764 O_BomoMSG12489_5prime_partial:A_BomoMSG_c23832_g1_i2
270bp
2765 O_BomoMSG1248_3prime_partial:A_BomoMSG_c5664_g1_i1
166bp
 EH_domain-binding_protein_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0008150 P biological_process
GO:0016020 C membrane
2766 O_BomoMSG12490_complete:A_BomoMSG_c23833_g1_i1
599bp
 replication_protein_A1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005634 C nucleus
GO:0005662 C DNA replication factor A complex
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0007052 P mitotic spindle organization
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0019233 P sensory perception of pain
GO:0046872 F metal ion binding
GO:0048812 P neuron projection morphogenesis
2767 O_BomoMSG12491_complete:A_BomoMSG_c23833_g1_i2
599bp
 replication_protein_A1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005634 C nucleus
GO:0005662 C DNA replication factor A complex
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0007052 P mitotic spindle organization
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0019233 P sensory perception of pain
GO:0046872 F metal ion binding
GO:0048812 P neuron projection morphogenesis
2768 O_BomoMSG12492_complete:A_BomoMSG_c23835_g1_i1
225bp
 polycomb_group_RING_finger_protein_3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0031519 C PcG protein complex
GO:0046872 F metal ion binding
2769 O_BomoMSG12493_3prime_partial:A_BomoMSG_c23836_g1_i1
112bp
 meiosis_arrest_female_protein_1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005777 C peroxisome
GO:0010468 P regulation of gene expression
GO:0030154 P cell differentiation
GO:0048477 P oogenesis
GO:0051321 P meiotic cell cycle
2770 O_BomoMSG12494_internal:A_BomoMSG_c23836_g1_i2
791bp
 meiosis_arrest_female_protein_1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005777 C peroxisome
GO:0010468 P regulation of gene expression
GO:0030154 P cell differentiation
GO:0048477 P oogenesis
GO:0051321 P meiotic cell cycle
2771 O_BomoMSG12495_complete:A_BomoMSG_c23836_g1_i2
122bp
2772 O_BomoMSG12496_complete:A_BomoMSG_c23836_g1_i2
121bp
2773 O_BomoMSG12497_internal:A_BomoMSG_c23836_g1_i3
400bp
 meiosis_arrest_female_protein_1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005777 C peroxisome
GO:0010468 P regulation of gene expression
GO:0030154 P cell differentiation
GO:0048477 P oogenesis
GO:0051321 P meiotic cell cycle
2774 O_BomoMSG12498_internal:A_BomoMSG_c23839_g1_i1
376bp
 Gag-like_protein_[Operophtera_brumata]
2775 O_BomoMSG12499_complete:A_BomoMSG_c23841_g1_i1
362bp
 BTB/POZ_and_MATH_domain-containing_protein_2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2776 O_BomoMSG1249_internal:A_BomoMSG_c5665_g1_i1
106bp
 PREDICTED:_E3_ubiquitin-protein_ligase_UBR3-like,_partial_[Papilio_machaon]
GO:0000151 C ubiquitin ligase complex
GO:0001701 P in utero embryonic development
GO:0001967 P suckling behavior
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007608 P sensory perception of smell
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042048 P olfactory behavior
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
2777 O_BomoMSG124_internal:A_BomoMSG_c443_g1_i1
168bp
 putative_ATP-dependent_RNA_helicase_TDRD12_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030154 P cell differentiation
GO:0031047 P gene silencing by RNA
GO:0031965 C nuclear membrane
GO:0043186 C P granule
GO:0051321 P meiotic cell cycle
GO:1990923 C PET complex
2778 O_BomoMSG12500_complete:A_BomoMSG_c23841_g1_i1
108bp
2779 O_BomoMSG12501_complete:A_BomoMSG_c23841_g1_i2
362bp
 BTB/POZ_and_MATH_domain-containing_protein_2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2780 O_BomoMSG12502_complete:A_BomoMSG_c23841_g1_i2
108bp
2781 O_BomoMSG12503_complete:A_BomoMSG_c23845_g1_i1
131bp
 leptin_receptor_gene-related_protein_isoform_X3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0008150 P biological_process
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2782 O_BomoMSG12504_5prime_partial:A_BomoMSG_c23846_g1_i1
154bp
 leucine-rich_repeat-containing_protein_70_[Bombyx_mori]
2783 O_BomoMSG12505_5prime_partial:A_BomoMSG_c23846_g1_i1
120bp
2784 O_BomoMSG12506_complete:A_BomoMSG_c23846_g1_i2
407bp
 leucine-rich_repeat-containing_protein_70_[Bombyx_mori]
GO:0002091 P negative regulation of receptor internalization
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0042043 F neurexin family protein binding
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0050808 P synapse organization
GO:0051965 P positive regulation of synapse assembly
GO:0060076 C excitatory synapse
GO:0060291 P long-term synaptic potentiation
2785 O_BomoMSG12507_5prime_partial:A_BomoMSG_c23846_g1_i2
120bp
2786 O_BomoMSG12508_5prime_partial:A_BomoMSG_c23846_g1_i3
179bp
 leucine-rich_repeat-containing_protein_70_[Bombyx_mori]
2787 O_BomoMSG12509_5prime_partial:A_BomoMSG_c23846_g1_i3
120bp
2788 O_BomoMSG1250_internal:A_BomoMSG_c5665_g1_i1
106bp
2789 O_BomoMSG12510_internal:A_BomoMSG_c23847_g1_i2
108bp
2790 O_BomoMSG12511_internal:A_BomoMSG_c23847_g1_i2
108bp
 silk_fibroin_heavy_chain,_partial_[Bombyx_mori]
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