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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2731 O_BomoMSG12459_complete:A_BomoMSG_c23818_g1_i2
110bp
2732 O_BomoMSG1245_internal:A_BomoMSG_c5640_g1_i1
133bp
 uncharacterized_protein_LOC110386573_[Bombyx_mori]
2733 O_BomoMSG12460_complete:A_BomoMSG_c23819_g4_i1
341bp
 heterotrimeric_guanine_nucleotide-binding_protein_beta_subunit_isoform_X1_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0007165 P signal transduction
2734 O_BomoMSG12461_3prime_partial:A_BomoMSG_c23819_g4_i1
139bp
2735 O_BomoMSG12462_complete:A_BomoMSG_c23819_g4_i1
129bp
2736 O_BomoMSG12463_internal:A_BomoMSG_c23821_g1_i1
253bp
 DNA-directed_RNA_polymerase_II_subunit_RPB2,_partial_[Melipona_quadrifasciata]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0032549 F ribonucleoside binding
GO:0046872 F metal ion binding
2737 O_BomoMSG12464_3prime_partial:A_BomoMSG_c23821_g1_i2
1172bp
 LOW_QUALITY_PROTEIN:_DNA-directed_RNA_polymerase_II_subunit_RPB2_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0032549 F ribonucleoside binding
GO:0046872 F metal ion binding
2738 O_BomoMSG12465_5prime_partial:A_BomoMSG_c23823_g2_i1
206bp
 nuclear_autoantigenic_sperm_protein_[Bombyx_mori]
GO:0000790 C chromatin
GO:0001824 P blastocyst development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006334 P nucleosome assembly
GO:0006335 P DNA replication-dependent chromatin assembly
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0008283 P cell population proliferation
GO:0008584 P male gonad development
GO:0015031 P protein transport
GO:0032403 F protein-containing complex binding
GO:0033574 P response to testosterone
GO:0043234 C protein-containing complex
GO:0043486 P histone exchange
GO:0051879 F Hsp90 protein binding
2739 O_BomoMSG12466_internal:A_BomoMSG_c23823_g2_i2
160bp
 nuclear_autoantigenic_sperm_protein_[Bombyx_mori]
GO:0000790 C chromatin
GO:0001824 P blastocyst development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006334 P nucleosome assembly
GO:0006335 P DNA replication-dependent chromatin assembly
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0008283 P cell population proliferation
GO:0008584 P male gonad development
GO:0015031 P protein transport
GO:0032403 F protein-containing complex binding
GO:0033574 P response to testosterone
GO:0043234 C protein-containing complex
GO:0043486 P histone exchange
GO:0051879 F Hsp90 protein binding
2740 O_BomoMSG12467_complete:A_BomoMSG_c23824_g2_i1
209bp
 ras-related_protein_Rab-18_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001654 P eye development
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007420 P brain development
GO:0008152 P metabolic process
GO:0009925 C basal plasma membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0019003 F GDP binding
GO:0034389 P lipid droplet organization
GO:0070062 C extracellular exosome
GO:0071782 C endoplasmic reticulum tubular network
GO:0071786 P endoplasmic reticulum tubular network organization
2741 O_BomoMSG12468_complete:A_BomoMSG_c23826_g1_i1
383bp
 AN1-type_zinc_finger_protein_4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
2742 O_BomoMSG12469_5prime_partial:A_BomoMSG_c23827_g1_i1
731bp
 elongation_factor_G,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006414 P translational elongation
GO:0070125 P mitochondrial translational elongation
2743 O_BomoMSG1246_3prime_partial:A_BomoMSG_c5647_g1_i1
139bp
 ethanolamine-phosphate_cytidylyltransferase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004306 F ethanolamine-phosphate cytidylyltransferase activity
GO:0005575 C cellular_component
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006646 P phosphatidylethanolamine biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0009058 P biosynthetic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2744 O_BomoMSG12470_complete:A_BomoMSG_c23827_g1_i1
103bp
2745 O_BomoMSG12471_complete:A_BomoMSG_c23827_g1_i2
748bp
 elongation_factor_G,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006414 P translational elongation
GO:0070125 P mitochondrial translational elongation
2746 O_BomoMSG12472_complete:A_BomoMSG_c23827_g1_i2
103bp
2747 O_BomoMSG12473_internal:A_BomoMSG_c23829_g1_i1
613bp
 programmed_cell_death_6-interacting_protein_[Bombyx_mori]
GO:0006810 P transport
GO:0015031 P protein transport
2748 O_BomoMSG12474_5prime_partial:A_BomoMSG_c23829_g1_i1
327bp
2749 O_BomoMSG12475_5prime_partial:A_BomoMSG_c23829_g1_i1
287bp
2750 O_BomoMSG12476_internal:A_BomoMSG_c23829_g1_i2
420bp
 programmed_cell_death_6-interacting_protein_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006810 P transport
GO:0006915 P apoptotic process
GO:0007049 P cell cycle
GO:0015031 P protein transport
GO:0017124 F SH3 domain binding
GO:0042470 C melanosome
GO:0051301 P cell division
GO:0070062 C extracellular exosome
2751 O_BomoMSG12477_5prime_partial:A_BomoMSG_c23829_g1_i2
327bp
2752 O_BomoMSG12478_5prime_partial:A_BomoMSG_c23829_g1_i2
287bp
2753 O_BomoMSG12479_3prime_partial:A_BomoMSG_c23831_g1_i1
499bp
 vinculin_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0005925 C focal adhesion
GO:0006909 P phagocytosis
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007155 P cell adhesion
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0048812 P neuron projection morphogenesis
GO:0051015 F actin filament binding
2754 O_BomoMSG1247_internal:A_BomoMSG_c5648_g1_i1
164bp
 dmX-like_protein_2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2755 O_BomoMSG12480_complete:A_BomoMSG_c23831_g1_i1
162bp
2756 O_BomoMSG12481_5prime_partial:A_BomoMSG_c23831_g1_i1
149bp
2757 O_BomoMSG12482_complete:A_BomoMSG_c23831_g1_i1
103bp
2758 O_BomoMSG12483_internal:A_BomoMSG_c23831_g1_i2
295bp
 vinculin_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0005925 C focal adhesion
GO:0006909 P phagocytosis
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007155 P cell adhesion
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0048812 P neuron projection morphogenesis
GO:0051015 F actin filament binding
2759 O_BomoMSG12484_complete:A_BomoMSG_c23831_g1_i2
162bp
2760 O_BomoMSG12485_5prime_partial:A_BomoMSG_c23831_g1_i2
149bp
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