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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
241 O_BomoMSG10217_5prime_partial:A_BomoMSG_c22528_g1_i1
140bp
 SAGA-associated_factor_29_isoform_X4_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0019899 F enzyme binding
GO:0035064 F methylated histone binding
GO:0043966 P histone H3 acetylation
GO:0047485 F protein N-terminus binding
GO:0070461 C SAGA-type complex
GO:0071169 P establishment of protein localization to chromatin
242 O_BomoMSG10218_5prime_partial:A_BomoMSG_c22530_g1_i1
105bp
 adenine_phosphoribosyltransferase_isoform_X3_[Bombyx_mori]
GO:0003999 F adenine phosphoribosyltransferase activity
GO:0005737 C cytoplasm
GO:0006166 P purine ribonucleoside salvage
GO:0006168 P adenine salvage
GO:0009116 P nucleoside metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0044209 P AMP salvage
243 O_BomoMSG10219_complete:A_BomoMSG_c22530_g1_i3
184bp
 adenine_phosphoribosyltransferase_isoform_X1_[Bombyx_mori]
GO:0003999 F adenine phosphoribosyltransferase activity
GO:0005737 C cytoplasm
GO:0006166 P purine ribonucleoside salvage
GO:0006168 P adenine salvage
GO:0009116 P nucleoside metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0044209 P AMP salvage
244 O_BomoMSG1021_complete:A_BomoMSG_c4722_g1_i1
116bp
245 O_BomoMSG10220_5prime_partial:A_BomoMSG_c22531_g1_i1
103bp
 uncharacterized_protein_LOC101735705_isoform_X3_[Bombyx_mori]
246 O_BomoMSG10221_5prime_partial:A_BomoMSG_c22532_g1_i1
253bp
 zinc_finger_protein_ubi-d4_isoform_X2_[Bombyx_mori]
GO:0002230 P positive regulation of defense response to virus by host
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007399 P nervous system development
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0046872 F metal ion binding
GO:0071565 C nBAF complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
247 O_BomoMSG10222_3prime_partial:A_BomoMSG_c22532_g1_i1
139bp
248 O_BomoMSG10223_5prime_partial:A_BomoMSG_c22532_g1_i1
103bp
249 O_BomoMSG10224_5prime_partial:A_BomoMSG_c22532_g1_i2
516bp
 zinc_finger_protein_ubi-d4_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007399 P nervous system development
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
GO:0071565 C nBAF complex
250 O_BomoMSG10225_complete:A_BomoMSG_c22532_g1_i2
179bp
251 O_BomoMSG10226_5prime_partial:A_BomoMSG_c22532_g1_i2
128bp
252 O_BomoMSG10227_internal:A_BomoMSG_c22534_g1_i1
102bp
 NEDD8-activating_enzyme_E1_regulatory_subunit_[Bombyx_mori]
GO:0001540 F amyloid-beta binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0008641 F ubiquitin-like modifier activating enzyme activity
GO:0019781 F NEDD8 activating enzyme activity
GO:0043234 C protein-containing complex
GO:0045116 P protein neddylation
GO:0046982 F protein heterodimerization activity
253 O_BomoMSG10228_internal:A_BomoMSG_c22534_g1_i3
155bp
 NEDD8-activating_enzyme_E1_regulatory_subunit_[Bombyx_mori]
GO:0008641 F ubiquitin-like modifier activating enzyme activity
GO:0019781 F NEDD8 activating enzyme activity
GO:0045116 P protein neddylation
254 O_BomoMSG10229_5prime_partial:A_BomoMSG_c22538_g1_i1
232bp
 transmembrane_protein_223_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0007399 P nervous system development
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
255 O_BomoMSG1022_complete:A_BomoMSG_c4722_g1_i2
561bp
 EN_protein_binding/engrailed_nuclear_homeoprotein-regulated_protein_[Bombyx_mori]
256 O_BomoMSG10230_complete:A_BomoMSG_c22538_g1_i2
231bp
 transmembrane_protein_223_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0007399 P nervous system development
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
257 O_BomoMSG10231_complete:A_BomoMSG_c22538_g1_i3
231bp
 transmembrane_protein_223_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0007399 P nervous system development
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
258 O_BomoMSG10232_3prime_partial:A_BomoMSG_c22541_g1_i1
258bp
 BLOC-1-related_complex_subunit_5_[Bombyx_mori]
259 O_BomoMSG10233_internal:A_BomoMSG_c22541_g1_i2
161bp
 BLOC-1-related_complex_subunit_5_[Bombyx_mori]
260 O_BomoMSG10234_internal:A_BomoMSG_c22544_g1_i1
169bp
 uncharacterized_protein_LOC101737542_[Bombyx_mori]
261 O_BomoMSG10235_5prime_partial:A_BomoMSG_c22544_g1_i1
115bp
262 O_BomoMSG10236_3prime_partial:A_BomoMSG_c22545_g1_i3
109bp
 peroxisome_biogenesis_factor_2_[Helicoverpa_armigera]
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0007031 P peroxisome organization
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0046872 F metal ion binding
263 O_BomoMSG10237_5prime_partial:A_BomoMSG_c22545_g1_i4
177bp
 peroxisome_biogenesis_factor_2_[Bombyx_mori]
GO:0000038 P very long-chain fatty acid metabolic process
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003674 F molecular_function
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0006635 P fatty acid beta-oxidation
GO:0007031 P peroxisome organization
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016558 P protein import into peroxisome matrix
GO:0016593 C Cdc73/Paf1 complex
GO:0031648 P protein destabilization
GO:0046872 F metal ion binding
GO:0048147 P negative regulation of fibroblast proliferation
GO:0050680 P negative regulation of epithelial cell proliferation
264 O_BomoMSG10238_3prime_partial:A_BomoMSG_c22545_g1_i6
109bp
 peroxisome_biogenesis_factor_2_[Helicoverpa_armigera]
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0007031 P peroxisome organization
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0046872 F metal ion binding
265 O_BomoMSG10239_internal:A_BomoMSG_c22546_g1_i1
229bp
 dystrophin,_isoforms_A/C/F/G/H-like,_partial_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005886 C plasma membrane
GO:0007050 P regulation of cell cycle
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0010632 P regulation of epithelial cell migration
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016887 F ATP hydrolysis activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0032587 C ruffle membrane
GO:0032886 P regulation of microtubule-based process
GO:0042060 P wound healing
GO:0042995 C cell projection
GO:0043001 P Golgi to plasma membrane protein transport
GO:0046872 F metal ion binding
GO:0051893 P regulation of focal adhesion assembly
266 O_BomoMSG1023_complete:A_BomoMSG_c4722_g1_i2
126bp
267 O_BomoMSG10240_5prime_partial:A_BomoMSG_c22546_g1_i1
175bp
268 O_BomoMSG10241_internal:A_BomoMSG_c22546_g2_i1
211bp
 dystrophin,_isoforms_A/C/F/G/H-like,_partial_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007274 P neuromuscular synaptic transmission
GO:0007474 P imaginal disc-derived wing vein specification
GO:0008092 F cytoskeletal protein binding
GO:0008270 F zinc ion binding
GO:0008307 F structural constituent of muscle
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016010 C dystrophin-associated glycoprotein complex
GO:0016020 C membrane
GO:0030010 P establishment of cell polarity
GO:0042383 C sarcolemma
GO:0045202 C synapse
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0046928 P regulation of neurotransmitter secretion
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0050699 F WW domain binding
269 O_BomoMSG10242_3prime_partial:A_BomoMSG_c22546_g2_i1
130bp
270 O_BomoMSG10243_5prime_partial:A_BomoMSG_c22546_g2_i1
129bp
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