Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
2161	O_BomoMSG11946_complete:A_BomoMSG_c23536_g1_i1 636bp	Bomo_Chr15	60_kDa_SS-A/Ro_ribonucleoprotein_[Bombyx_mori]	GO:0003723 F RNA binding GO:0005737 C cytoplasm GO:0030030 P cell projection organization GO:0030529 C ribonucleoprotein complex GO:0034336 F misfolded RNA binding GO:0046872 F metal ion binding
2162	O_BomoMSG11947_complete:A_BomoMSG_c23536_g1_i1 110bp	Bomo_Chr15
2163	O_BomoMSG11948_internal:A_BomoMSG_c23537_g1_i1 162bp	Bomo_Chr5	myosin-IIIb-like_isoform_X3_[Bombyx_mori]
2164	O_BomoMSG11949_internal:A_BomoMSG_c23537_g1_i2 204bp	Bomo_Chr5	myosin-IIIb-like_isoform_X3_[Bombyx_mori]
2165	O_BomoMSG1194_5prime_partial:A_BomoMSG_c5509_g1_i1 105bp	Bomo_Chr15
2166	O_BomoMSG11950_5prime_partial:A_BomoMSG_c23537_g1_i2 103bp	Bomo_Chr5
2167	O_BomoMSG11951_internal:A_BomoMSG_c23538_g1_i1 170bp	Bomo_Chr25	CAAX_prenyl_protease_2_[Bombyx_mori]	GO:0004197 F cysteine-type endopeptidase activity GO:0004222 F metalloendopeptidase activity GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0006508 P proteolysis GO:0008233 F peptidase activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016787 F hydrolase activity GO:0030176 C integral component of endoplasmic reticulum membrane GO:0071586 P CAAX-box protein processing
2168	O_BomoMSG11952_internal:A_BomoMSG_c23538_g2_i1 104bp	Bomo_Chr25	CAAX_prenyl_protease_2_[Bombyx_mori]	GO:0004197 F cysteine-type endopeptidase activity GO:0004222 F metalloendopeptidase activity GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0006508 P proteolysis GO:0008233 F peptidase activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016787 F hydrolase activity GO:0030176 C integral component of endoplasmic reticulum membrane GO:0071586 P CAAX-box protein processing
2169	O_BomoMSG11953_complete:A_BomoMSG_c23539_g1_i3 150bp	Bomo_Chr15	PAXIP1-associated_glutamate-rich_protein_1_[Bombyx_mori]	GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0006281 P DNA repair GO:0006310 P DNA recombination GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006974 P cellular response to DNA damage stimulus GO:0030331 F estrogen receptor binding GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway GO:0035097 C histone methyltransferase complex GO:0044666 C MLL3/4 complex GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0048304 P positive regulation of isotype switching to IgG isotypes GO:0060717 P chorion development GO:0071557 P histone H3-K27 demethylation GO:1902749 P regulation of cell cycle G2/M phase transition GO:1902808 P positive regulation of cell cycle G1/S phase transition GO:2001022 P positive regulation of response to DNA damage stimulus
2170	O_BomoMSG11954_5prime_partial:A_BomoMSG_c23540_g1_i1 366bp	Bomo_Chr4	keratin,_type_I_cytoskeletal_9_[Bombyx_mori]
2171	O_BomoMSG11955_complete:A_BomoMSG_c23540_g1_i1 176bp	Bomo_Chr4
2172	O_BomoMSG11956_complete:A_BomoMSG_c23540_g1_i1 116bp	Bomo_Chr4
2173	O_BomoMSG11957_5prime_partial:A_BomoMSG_c23540_g1_i2 598bp	Bomo_Chr4	keratin,_type_I_cytoskeletal_9_[Bombyx_mori]	GO:0000122 P negative regulation of transcription by RNA polymerase II GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0003676 F nucleic acid binding GO:0003712 F transcription coregulator activity GO:0003713 F transcription coactivator activity GO:0003723 F RNA binding GO:0003724 F RNA helicase activity GO:0004004 F RNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005681 C spliceosomal complex GO:0005730 C nucleolus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010501 P RNA secondary structure unwinding GO:0016787 F hydrolase activity GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0030331 F estrogen receptor binding GO:0043517 P positive regulation of DNA damage response, signal transduction by p53 class mediator GO:0045667 P regulation of osteoblast differentiation GO:0045893 P positive regulation of transcription, DNA-templated GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0048511 P rhythmic process GO:0050681 F androgen receptor binding GO:0060765 P regulation of androgen receptor signaling pathway GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator GO:2001014 P regulation of skeletal muscle cell differentiation
2174	O_BomoMSG11958_complete:A_BomoMSG_c23540_g1_i2 176bp	Bomo_Chr4
2175	O_BomoMSG11959_complete:A_BomoMSG_c23540_g1_i2 116bp	Bomo_Chr4
2176	O_BomoMSG1195_5prime_partial:A_BomoMSG_c5510_g1_i1 155bp	Bomo_Chr23	ras-related_GTP-binding_protein_4b_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003924 F GTPase activity GO:0005525 F GTP binding GO:0005622 C intracellular anatomical structure GO:0005768 C endosome GO:0005886 C plasma membrane GO:0006810 P transport GO:0006886 P intracellular protein transport GO:0006913 P nucleocytoplasmic transport GO:0007165 P signal transduction GO:0007264 P small GTPase mediated signal transduction GO:0008152 P metabolic process GO:0015031 P protein transport GO:0016020 C membrane GO:0030100 P regulation of endocytosis GO:0032593 C insulin-responsive compartment
2177	O_BomoMSG11960_5prime_partial:A_BomoMSG_c23540_g1_i3 191bp	Bomo_Chr4	PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX17_isoform_X1_[Aethina_tumida]	GO:0000122 P negative regulation of transcription by RNA polymerase II GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0003676 F nucleic acid binding GO:0003712 F transcription coregulator activity GO:0003713 F transcription coactivator activity GO:0003723 F RNA binding GO:0003724 F RNA helicase activity GO:0004004 F RNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005681 C spliceosomal complex GO:0005730 C nucleolus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010501 P RNA secondary structure unwinding GO:0016787 F hydrolase activity GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0030331 F estrogen receptor binding GO:0043517 P positive regulation of DNA damage response, signal transduction by p53 class mediator GO:0045667 P regulation of osteoblast differentiation GO:0045893 P positive regulation of transcription, DNA-templated GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0048511 P rhythmic process GO:0050681 F androgen receptor binding GO:0060765 P regulation of androgen receptor signaling pathway GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator GO:2001014 P regulation of skeletal muscle cell differentiation
2178	O_BomoMSG11961_5prime_partial:A_BomoMSG_c23540_g1_i4 598bp	Bomo_Chr4	keratin,_type_I_cytoskeletal_9_[Bombyx_mori]	GO:0000122 P negative regulation of transcription by RNA polymerase II GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0003676 F nucleic acid binding GO:0003712 F transcription coregulator activity GO:0003713 F transcription coactivator activity GO:0003723 F RNA binding GO:0003724 F RNA helicase activity GO:0004004 F RNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005681 C spliceosomal complex GO:0005730 C nucleolus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010501 P RNA secondary structure unwinding GO:0016787 F hydrolase activity GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0030331 F estrogen receptor binding GO:0043517 P positive regulation of DNA damage response, signal transduction by p53 class mediator GO:0045667 P regulation of osteoblast differentiation GO:0045893 P positive regulation of transcription, DNA-templated GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0048511 P rhythmic process GO:0050681 F androgen receptor binding GO:0060765 P regulation of androgen receptor signaling pathway GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator GO:2001014 P regulation of skeletal muscle cell differentiation
2179	O_BomoMSG11962_complete:A_BomoMSG_c23540_g1_i4 176bp	Bomo_Chr4
2180	O_BomoMSG11963_complete:A_BomoMSG_c23540_g1_i4 116bp	Bomo_Chr4
2181	O_BomoMSG11964_5prime_partial:A_BomoMSG_c23541_g1_i1 108bp	Bomo_Scaf145
2182	O_BomoMSG11965_3prime_partial:A_BomoMSG_c23542_g1_i1 274bp	Bomo_Chr23	uncharacterized_aarF_domain-containing_protein_kinase_1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0005524 F ATP binding GO:0005576 C extracellular region GO:0006468 P protein phosphorylation GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity
2183	O_BomoMSG11966_internal:A_BomoMSG_c23542_g1_i2 227bp	Bomo_Chr23	uncharacterized_aarF_domain-containing_protein_kinase_1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0005524 F ATP binding GO:0005576 C extracellular region GO:0006468 P protein phosphorylation GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity
2184	O_BomoMSG11967_3prime_partial:A_BomoMSG_c23543_g1_i1 182bp	Bomo_Chr19	serine/threonine-protein_kinase_TBK1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0002376 P immune system process GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0006468 P protein phosphorylation GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0045087 P innate immune response
2185	O_BomoMSG11968_internal:A_BomoMSG_c23543_g2_i1 272bp	Bomo_Chr19	serine/threonine-protein_kinase_TBK1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0004704 F NF-kappaB-inducing kinase activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006468 P protein phosphorylation GO:0006955 P immune response GO:0006974 P cellular response to DNA damage stimulus GO:0007252 P I-kappaB phosphorylation GO:0008384 F IkappaB kinase activity GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage GO:0010008 C endosome membrane GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016605 C PML body GO:0016740 F transferase activity GO:0031625 F ubiquitin protein ligase binding GO:0031966 C mitochondrial membrane GO:0032480 P negative regulation of type I interferon production GO:0034340 P response to type I interferon GO:0035456 P response to interferon-beta GO:0035666 P TRIF-dependent toll-like receptor signaling pathway GO:0036435 F K48-linked polyubiquitin modification-dependent protein binding GO:0038061 P NIK/NF-kappaB signaling GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling GO:0051260 P protein homooligomerization GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding GO:0098586 P cellular response to virus
2186	O_BomoMSG11969_5prime_partial:A_BomoMSG_c23543_g2_i1 102bp	Bomo_Chr19
2187	O_BomoMSG1196_internal:A_BomoMSG_c5511_g1_i1 204bp	Bomo_Chr18	DNA_repair_protein_REV1_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003684 F damaged DNA binding GO:0005634 C nucleus GO:0006281 P DNA repair GO:0006974 P cellular response to DNA damage stimulus GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0042276 P error-prone translesion synthesis GO:0046872 F metal ion binding GO:0071897 P DNA biosynthetic process
2188	O_BomoMSG11970_complete:A_BomoMSG_c23544_g1_i1 548bp	Bomo_Chr12	mitochondrial_import_receptor_subunit_TOM70_[Bombyx_mori]	GO:0005515 F protein binding GO:0005739 C mitochondrion GO:0005741 C mitochondrial outer membrane GO:0005742 C mitochondrial outer membrane translocase complex GO:0006626 P protein targeting to mitochondrion GO:0008320 F protein transmembrane transporter activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016236 P macroautophagy GO:0070062 C extracellular exosome GO:0071806 P protein transmembrane transport
2189	O_BomoMSG11971_5prime_partial:A_BomoMSG_c23547_g1_i1 227bp	Bomo_Chr14	probable_asparagine--tRNA_ligase,_mitochondrial_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0004812 F aminoacyl-tRNA ligase activity GO:0004816 F asparagine-tRNA ligase activity GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0005739 C mitochondrion GO:0005759 C mitochondrial matrix GO:0006412 P translation GO:0006418 P tRNA aminoacylation for protein translation GO:0006421 P asparaginyl-tRNA aminoacylation GO:0016874 F ligase activity
2190	O_BomoMSG11972_internal:A_BomoMSG_c23548_g1_i1 394bp	Bomo_Chr25	putative_epidermal_cell_surface_receptor_[Bombyx_mori]	GO:0002168 P instar larval development GO:0004872 F signaling receptor activity GO:0005887 C integral component of plasma membrane GO:0007275 P multicellular organism development GO:0007411 P axon guidance GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016324 C apical plasma membrane