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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1531 O_BomoMSG11379_5prime_partial:A_BomoMSG_c23259_g1_i4
200bp
 methyltransferase-like_protein_9_[Bombyx_mori]
1532 O_BomoMSG1137_internal:A_BomoMSG_c5367_g1_i1
151bp
 transcriptional_regulator_ATRX_[Bombyx_mori]
1533 O_BomoMSG11380_5prime_partial:A_BomoMSG_c23259_g1_i5
131bp
 methyltransferase-like_protein_9_[Bombyx_mori]
GO:0005515 F protein binding
1534 O_BomoMSG11381_3prime_partial:A_BomoMSG_c23260_g1_i1
219bp
 shootin-1_isoform_X2_[Bombyx_mori]
1535 O_BomoMSG11382_3prime_partial:A_BomoMSG_c23260_g1_i2
291bp
 uncharacterized_protein_LOC101745345_isoform_X1_[Bombyx_mori]
1536 O_BomoMSG11383_internal:A_BomoMSG_c23261_g1_i1
180bp
 uncharacterized_protein_LOC101739061_[Bombyx_mori]
1537 O_BomoMSG11384_3prime_partial:A_BomoMSG_c23261_g1_i2
259bp
 uncharacterized_protein_LOC101739061_[Bombyx_mori]
1538 O_BomoMSG11385_complete:A_BomoMSG_c23262_g1_i1
284bp
 leukocyte_receptor_cluster_member_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
1539 O_BomoMSG11386_internal:A_BomoMSG_c23263_g1_i1
423bp
 DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
1540 O_BomoMSG11387_internal:A_BomoMSG_c23264_g1_i1
285bp
 E3_ubiquitin-protein_ligase_HECTD1_isoform_X2_[Bombyx_mori]
GO:0001779 P natural killer cell differentiation
GO:0001843 P neural tube closure
GO:0001892 P embryonic placenta development
GO:0003170 P heart valve development
GO:0003281 P ventricular septum development
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0035904 P aorta development
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0060707 P trophoblast giant cell differentiation
GO:0060708 P spongiotrophoblast differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:1903077 P negative regulation of protein localization to plasma membrane
1541 O_BomoMSG11388_3prime_partial:A_BomoMSG_c23264_g1_i2
352bp
 E3_ubiquitin-protein_ligase_HECTD1_isoform_X2_[Bombyx_mori]
GO:0001779 P natural killer cell differentiation
GO:0001843 P neural tube closure
GO:0001892 P embryonic placenta development
GO:0003170 P heart valve development
GO:0003281 P ventricular septum development
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0035904 P aorta development
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0060707 P trophoblast giant cell differentiation
GO:0060708 P spongiotrophoblast differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:1903077 P negative regulation of protein localization to plasma membrane
1542 O_BomoMSG11389_internal:A_BomoMSG_c23266_g1_i1
401bp
 v-src_sarcoma_(Schmidt-Ruppin_A-2)_viral_oncogene_homolog_isoform_X4_[Bombyx_mori]
1543 O_BomoMSG1138_internal:A_BomoMSG_c5375_g1_i1
146bp
 zinc_finger_protein_718_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007517 P muscle organ development
GO:0014019 P neuroblast development
GO:0030154 P cell differentiation
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0048666 P neuron development
GO:0048813 P dendrite morphogenesis
GO:0070983 P dendrite guidance
1544 O_BomoMSG11390_complete:A_BomoMSG_c23266_g1_i1
102bp
1545 O_BomoMSG11391_3prime_partial:A_BomoMSG_c23266_g2_i1
331bp
 v-src_sarcoma_(Schmidt-Ruppin_A-2)_viral_oncogene_homolog_isoform_X5_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0030374 F nuclear receptor coactivator activity
GO:0035257 F nuclear receptor binding
GO:0046983 F protein dimerization activity
1546 O_BomoMSG11392_3prime_partial:A_BomoMSG_c23266_g2_i2
371bp
 v-src_sarcoma_(Schmidt-Ruppin_A-2)_viral_oncogene_homolog_isoform_X3_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0030374 F nuclear receptor coactivator activity
GO:0035257 F nuclear receptor binding
GO:0046983 F protein dimerization activity
1547 O_BomoMSG11393_3prime_partial:A_BomoMSG_c23267_g1_i1
283bp
 uncharacterized_protein_LOC101745111_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001709 P cell fate determination
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007298 P border follicle cell migration
GO:0007422 P peripheral nervous system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0008360 P regulation of cell shape
GO:0016476 P regulation of embryonic cell shape
GO:0017053 C transcription repressor complex
GO:0030707 P ovarian follicle cell development
GO:0031208 F POZ domain binding
GO:0031987 P locomotion involved in locomotory behavior
GO:0035001 P dorsal trunk growth, open tracheal system
GO:0035147 P branch fusion, open tracheal system
GO:0035151 P regulation of tube size, open tracheal system
GO:0040003 P chitin-based cuticle development
GO:0042675 P compound eye cone cell differentiation
GO:0042682 P regulation of compound eye cone cell fate specification
GO:0042803 F protein homodimerization activity
GO:0043388 P positive regulation of DNA binding
GO:0045467 P R7 cell development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046843 P dorsal appendage formation
GO:0046872 F metal ion binding
GO:0048053 P R1/R6 development
GO:0048666 P neuron development
GO:0048750 P compound eye corneal lens morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0048854 P brain morphogenesis
GO:0060446 P branching involved in open tracheal system development
1548 O_BomoMSG11394_internal:A_BomoMSG_c23268_g1_i1
445bp
 probable_phospholipid-transporting_ATPase_IIB_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006897 P endocytosis
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0072600 P protein localization to Golgi apparatus
1549 O_BomoMSG11395_internal:A_BomoMSG_c23269_g1_i1
432bp
 major_facilitator_superfamily_domain-containing_protein_8_isoform_X1_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
1550 O_BomoMSG11396_5prime_partial:A_BomoMSG_c23269_g1_i1
149bp
1551 O_BomoMSG11397_5prime_partial:A_BomoMSG_c23269_g1_i1
141bp
1552 O_BomoMSG11398_internal:A_BomoMSG_c23269_g1_i2
171bp
 major_facilitator_superfamily_domain-containing_protein_8_isoform_X2_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
1553 O_BomoMSG11399_5prime_partial:A_BomoMSG_c23269_g1_i2
138bp
1554 O_BomoMSG1139_3prime_partial:A_BomoMSG_c5376_g1_i1
183bp
 putative_uncharacterized_protein_DDB_G0282499_[Bombyx_mori]
1555 O_BomoMSG113_5prime_partial:A_BomoMSG_c407_g1_i1
114bp
1556 O_BomoMSG11400_5prime_partial:A_BomoMSG_c23272_g1_i1
305bp
 methyltransferase-like_protein_22_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0043231 C intracellular membrane-bounded organelle
1557 O_BomoMSG11401_complete:A_BomoMSG_c23272_g1_i1
180bp
1558 O_BomoMSG11402_complete:A_BomoMSG_c23274_g1_i2
591bp
 serine/threonine-protein_phosphatase_2A_65_kDa_regulatory_subunit_A_alpha_isoform_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0000775 C chromosome, centromeric region
GO:0003823 F antigen binding
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006461 P protein-containing complex assembly
GO:0007059 P chromosome segregation
GO:0007143 P female meiotic nuclear division
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046982 F protein heterodimerization activity
GO:0051232 P meiotic spindle elongation
GO:0051306 P mitotic sister chromatid separation
GO:0051754 P meiotic sister chromatid cohesion, centromeric
GO:0070062 C extracellular exosome
GO:0070262 P peptidyl-serine dephosphorylation
GO:1903538 P regulation of meiotic cell cycle process involved in oocyte maturation
GO:2001241 P positive regulation of extrinsic apoptotic signaling pathway in absence of ligand
1559 O_BomoMSG11403_complete:A_BomoMSG_c23274_g1_i2
173bp
 NBS-LRR_type_resistance_protein_[Beta_vulgaris]
1560 O_BomoMSG11404_3prime_partial:A_BomoMSG_c23277_g1_i1
162bp
 cytochrome_c_oxidase_assembly_protein_COX15_homolog_isoform_X3_[Bombyx_mori]
GO:0004129 F cytochrome-c oxidase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006784 P heme A biosynthetic process
GO:0008535 P respiratory chain complex IV assembly
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0016653 F oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor
GO:0031966 C mitochondrial membrane
GO:0055114 P obsolete oxidation-reduction process
GO:0070069 C cytochrome complex
GO:1902600 P proton transmembrane transport
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