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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1411 O_BomoMSG11270_5prime_partial:A_BomoMSG_c23199_g1_i2
378bp
1412 O_BomoMSG11271_5prime_partial:A_BomoMSG_c23199_g1_i2
325bp
 PREDICTED:_tyrosine-protein_kinase_Blk_isoform_X3_[Hippocampus_comes]
1413 O_BomoMSG11272_5prime_partial:A_BomoMSG_c23199_g1_i2
118bp
 hypothetical_protein_RR48_14054_[Papilio_machaon]
1414 O_BomoMSG11273_internal:A_BomoMSG_c23201_g1_i1
360bp
 protein_prenyltransferase_alpha_subunit_repeat-containing_protein_1_[Bombyx_mori]
GO:0004659 F prenyltransferase activity
GO:0005737 C cytoplasm
GO:0008318 F protein prenyltransferase activity
GO:0016740 F transferase activity
GO:0018342 P protein prenylation
GO:1990234 C transferase complex
1415 O_BomoMSG11274_3prime_partial:A_BomoMSG_c23202_g1_i1
213bp
 uncharacterized_protein_LOC101741286_[Bombyx_mori]
1416 O_BomoMSG11275_3prime_partial:A_BomoMSG_c23202_g1_i2
213bp
 uncharacterized_protein_LOC101741286_[Bombyx_mori]
1417 O_BomoMSG11276_internal:A_BomoMSG_c23203_g1_i1
210bp
 S1_RNA-binding_domain-containing_protein_1_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0006139 P nucleobase-containing compound metabolic process
1418 O_BomoMSG11277_complete:A_BomoMSG_c23206_g1_i1
303bp
 activating_signal_cointegrator_1_complex_subunit_2_homolog_isoform_X5_[Bombyx_mori]
1419 O_BomoMSG11278_complete:A_BomoMSG_c23206_g1_i2
182bp
 extensin_isoform_X6_[Bombyx_mori]
1420 O_BomoMSG11279_complete:A_BomoMSG_c23206_g1_i3
212bp
 PREDICTED:_AT-rich_interactive_domain-containing_protein_1A-like_isoform_X1_[Papilio_polytes]
1421 O_BomoMSG1127_complete:A_BomoMSG_c5313_g1_i2
182bp
 succinate_dehydrogenase_cytochrome_b560_subunit,_mitochondrial_[Bombyx_mori]
GO:0000104 F succinate dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005749 C mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
GO:0006099 P tricarboxylic acid cycle
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0020037 F heme binding
GO:0045281 C succinate dehydrogenase complex
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
1422 O_BomoMSG11280_complete:A_BomoMSG_c23206_g1_i4
333bp
 activating_signal_cointegrator_1_complex_subunit_2_homolog_isoform_X5_[Bombyx_mori]
1423 O_BomoMSG11281_internal:A_BomoMSG_c23207_g1_i1
185bp
 protein_transport_protein_Sec31A_[Bombyx_mori]
GO:0001889 P liver development
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0007029 P endoplasmic reticulum organization
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0031410 C cytoplasmic vesicle
GO:0055123 P digestive system development
1424 O_BomoMSG11282_3prime_partial:A_BomoMSG_c23208_g1_i1
610bp
 ribonuclease_3_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0004525 F ribonuclease III activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0010468 P regulation of gene expression
GO:0010586 P miRNA metabolic process
GO:0010628 P positive regulation of gene expression
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031053 P primary miRNA processing
GO:0031054 P pre-miRNA processing
GO:0042254 P ribosome biogenesis
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0050829 P defense response to Gram-negative bacterium
GO:0050830 P defense response to Gram-positive bacterium
GO:0070877 C microprocessor complex
GO:0070878 F primary miRNA binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:2000628 P regulation of miRNA metabolic process
1425 O_BomoMSG11283_3prime_partial:A_BomoMSG_c23209_g1_i1
243bp
 zinc_finger_protein_596_isoform_X2_[Bombyx_mori]
1426 O_BomoMSG11284_complete:A_BomoMSG_c23209_g1_i2
398bp
 zinc_finger_protein_136_isoform_X4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
1427 O_BomoMSG11285_complete:A_BomoMSG_c23209_g1_i2
183bp
1428 O_BomoMSG11286_5prime_partial:A_BomoMSG_c23210_g1_i1
838bp
 uncharacterized_protein_LOC101736849_isoform_X1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
1429 O_BomoMSG11287_5prime_partial:A_BomoMSG_c23210_g1_i1
394bp
 hypothetical_protein_N336_00102,_partial_[Phalacrocorax_carbo]
1430 O_BomoMSG11288_internal:A_BomoMSG_c23211_g1_i1
139bp
 transcription_initiation_factor_IIB_isoform_X1_[Bombyx_mori]
GO:0001174 P transcriptional start site selection at RNA polymerase II promoter
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0017025 F TBP-class protein binding
GO:0046872 F metal ion binding
GO:0051101 P regulation of DNA binding
GO:0097550 C transcription preinitiation complex
1431 O_BomoMSG11289_complete:A_BomoMSG_c23212_g1_i1
367bp
 protein_ALP1-like_[Bombyx_mori]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1432 O_BomoMSG1128_5prime_partial:A_BomoMSG_c5319_g1_i1
128bp
 oocyte_zinc_finger_protein_XlCOF26_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
1433 O_BomoMSG11290_complete:A_BomoMSG_c23213_g1_i1
362bp
 inhibitor_of_apoptosis_protein_isoform_X1_[Bombyx_mori]
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
1434 O_BomoMSG11291_5prime_partial:A_BomoMSG_c23213_g1_i2
121bp
 inhibitor_of_apoptosis_protein_isoform_X1_[Bombyx_mori]
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
1435 O_BomoMSG11292_complete:A_BomoMSG_c23213_g1_i3
347bp
 inhibitor_of_apoptosis_protein_[Bombyx_mori]
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
1436 O_BomoMSG11293_complete:A_BomoMSG_c23214_g1_i1
204bp
 dnaJ_(Hsp40)_homolog_7_isoform_X1_[Bombyx_mori]
GO:0001964 P startle response
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006457 P protein folding
GO:0006887 P exocytosis
GO:0007269 P neurotransmitter secretion
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0016191 P synaptic vesicle uncoating
GO:0016192 P vesicle-mediated transport
GO:0031987 P locomotion involved in locomotory behavior
GO:0043195 C terminal bouton
GO:0048854 P brain morphogenesis
GO:0061176 C type Ib terminal bouton
GO:0061177 C type Is terminal bouton
GO:0070050 P neuron cellular homeostasis
GO:1900073 P regulation of neuromuscular synaptic transmission
GO:1903035 P negative regulation of response to wounding
1437 O_BomoMSG11294_complete:A_BomoMSG_c23214_g1_i2
204bp
 dnaJ_(Hsp40)_homolog_7_isoform_X1_[Bombyx_mori]
GO:0001964 P startle response
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006457 P protein folding
GO:0006887 P exocytosis
GO:0007269 P neurotransmitter secretion
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0016191 P synaptic vesicle uncoating
GO:0016192 P vesicle-mediated transport
GO:0031987 P locomotion involved in locomotory behavior
GO:0043195 C terminal bouton
GO:0048854 P brain morphogenesis
GO:0061176 C type Ib terminal bouton
GO:0061177 C type Is terminal bouton
GO:0070050 P neuron cellular homeostasis
GO:1900073 P regulation of neuromuscular synaptic transmission
GO:1903035 P negative regulation of response to wounding
1438 O_BomoMSG11295_complete:A_BomoMSG_c23214_g1_i3
203bp
 DnaJ_(Hsp40)_homolog_7_[Bombyx_mori]
GO:0001964 P startle response
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006457 P protein folding
GO:0006887 P exocytosis
GO:0007269 P neurotransmitter secretion
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0016191 P synaptic vesicle uncoating
GO:0016192 P vesicle-mediated transport
GO:0031987 P locomotion involved in locomotory behavior
GO:0043195 C terminal bouton
GO:0048854 P brain morphogenesis
GO:0061176 C type Ib terminal bouton
GO:0061177 C type Is terminal bouton
GO:0070050 P neuron cellular homeostasis
GO:1900073 P regulation of neuromuscular synaptic transmission
GO:1903035 P negative regulation of response to wounding
1439 O_BomoMSG11296_5prime_partial:A_BomoMSG_c23214_g1_i4
134bp
 dnaJ_(Hsp40)_homolog_7_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
1440 O_BomoMSG11297_internal:A_BomoMSG_c23215_g1_i1
342bp
 uncharacterized_protein_LOC101742950_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0030154 P cell differentiation
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0051038 P negative regulation of transcription involved in meiotic cell cycle
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