SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12631 O_BomoMSG21369_internal:A_BomoMSG_c26897_g2_i8
130bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
12632 O_BomoMSG2136_complete:A_BomoMSG_c10161_g1_i1
122bp
 high_mobility_group_protein_D_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
12633 O_BomoMSG21370_complete:A_BomoMSG_c26898_g1_i1
470bp
 putative_inorganic_phosphate_cotransporter_isoform_X1_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0015114 F phosphate ion transmembrane transporter activity
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035435 P phosphate ion transmembrane transport
GO:0055085 P transmembrane transport
12634 O_BomoMSG21371_complete:A_BomoMSG_c26898_g1_i1
130bp
12635 O_BomoMSG21372_complete:A_BomoMSG_c26898_g1_i2
487bp
 putative_inorganic_phosphate_cotransporter_isoform_X1_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0006820 P anion transport
GO:0015114 F phosphate ion transmembrane transporter activity
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0035435 P phosphate ion transmembrane transport
GO:0055085 P transmembrane transport
12636 O_BomoMSG21373_5prime_partial:A_BomoMSG_c26898_g1_i3
463bp
 putative_inorganic_phosphate_cotransporter_isoform_X1_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0015114 F phosphate ion transmembrane transporter activity
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035435 P phosphate ion transmembrane transport
GO:0055085 P transmembrane transport
12637 O_BomoMSG21374_5prime_partial:A_BomoMSG_c26898_g1_i4
256bp
 putative_inorganic_phosphate_cotransporter_isoform_X2_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0015114 F phosphate ion transmembrane transporter activity
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035435 P phosphate ion transmembrane transport
GO:0055085 P transmembrane transport
12638 O_BomoMSG21375_complete:A_BomoMSG_c26899_g1_i1
385bp
 cysteine-rich_with_EGF-like_domain_protein_2_isoform_X1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
12639 O_BomoMSG21376_complete:A_BomoMSG_c26899_g1_i2
327bp
 cysteine-rich_with_EGF-like_domain_protein_2_isoform_X2_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
12640 O_BomoMSG21377_internal:A_BomoMSG_c26902_g1_i1
137bp
 tetratricopeptide_repeat_protein_21B_[Bombyx_mori]
GO:0000790 C chromatin
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0008589 P regulation of smoothened signaling pathway
GO:0021591 P ventricular system development
GO:0021798 P forebrain dorsal/ventral pattern formation
GO:0030991 C intraciliary transport particle A
GO:0035721 P intraciliary retrograde transport
GO:0035735 P intraciliary transport involved in cilium assembly
GO:0042995 C cell projection
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072372 C cilium
GO:0097542 C ciliary tip
12641 O_BomoMSG21378_internal:A_BomoMSG_c26902_g1_i2
519bp
 tetratricopeptide_repeat_protein_21B_[Bombyx_mori]
GO:0000790 C chromatin
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0008589 P regulation of smoothened signaling pathway
GO:0021591 P ventricular system development
GO:0021798 P forebrain dorsal/ventral pattern formation
GO:0030991 C intraciliary transport particle A
GO:0035721 P intraciliary retrograde transport
GO:0035735 P intraciliary transport involved in cilium assembly
GO:0042995 C cell projection
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072372 C cilium
GO:0097542 C ciliary tip
12642 O_BomoMSG21379_internal:A_BomoMSG_c26902_g1_i3
574bp
 tetratricopeptide_repeat_protein_21B_[Bombyx_mori]
GO:0000790 C chromatin
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0008589 P regulation of smoothened signaling pathway
GO:0021591 P ventricular system development
GO:0021798 P forebrain dorsal/ventral pattern formation
GO:0030991 C intraciliary transport particle A
GO:0035721 P intraciliary retrograde transport
GO:0035735 P intraciliary transport involved in cilium assembly
GO:0042995 C cell projection
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072372 C cilium
GO:0097542 C ciliary tip
12643 O_BomoMSG2137_complete:A_BomoMSG_c10167_g1_i1
508bp
 coatomer_protein_complex_subunit_delta_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0008344 P adult locomotory behavior
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0021691 P cerebellar Purkinje cell layer maturation
GO:0030126 C COPI vesicle coat
GO:0030137 C COPI-coated vesicle
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0043231 C intracellular membrane-bounded organelle
GO:0043473 P pigmentation
GO:0044822 F RNA binding
GO:0048193 P Golgi vesicle transport
12644 O_BomoMSG21380_internal:A_BomoMSG_c26902_g1_i4
163bp
 tetratricopeptide_repeat_protein_21B_[Bombyx_mori]
GO:0000790 C chromatin
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0008589 P regulation of smoothened signaling pathway
GO:0021591 P ventricular system development
GO:0021798 P forebrain dorsal/ventral pattern formation
GO:0030991 C intraciliary transport particle A
GO:0035721 P intraciliary retrograde transport
GO:0035735 P intraciliary transport involved in cilium assembly
GO:0042995 C cell projection
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072372 C cilium
GO:0097542 C ciliary tip
12645 O_BomoMSG21381_internal:A_BomoMSG_c26902_g1_i5
410bp
 tetratricopeptide_repeat_protein_21B_[Bombyx_mori]
GO:0000790 C chromatin
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0008589 P regulation of smoothened signaling pathway
GO:0021591 P ventricular system development
GO:0021798 P forebrain dorsal/ventral pattern formation
GO:0030991 C intraciliary transport particle A
GO:0035721 P intraciliary retrograde transport
GO:0035735 P intraciliary transport involved in cilium assembly
GO:0042995 C cell projection
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072372 C cilium
GO:0097542 C ciliary tip
12646 O_BomoMSG21382_internal:A_BomoMSG_c26902_g1_i6
194bp
 tetratricopeptide_repeat_protein_21B_[Bombyx_mori]
GO:0000790 C chromatin
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0008589 P regulation of smoothened signaling pathway
GO:0021591 P ventricular system development
GO:0021798 P forebrain dorsal/ventral pattern formation
GO:0030991 C intraciliary transport particle A
GO:0035721 P intraciliary retrograde transport
GO:0035735 P intraciliary transport involved in cilium assembly
GO:0042995 C cell projection
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072372 C cilium
GO:0097542 C ciliary tip
12647 O_BomoMSG21383_internal:A_BomoMSG_c26902_g1_i8
157bp
 tetratricopeptide_repeat_protein_21B_[Bombyx_mori]
GO:0000790 C chromatin
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0008589 P regulation of smoothened signaling pathway
GO:0021591 P ventricular system development
GO:0021798 P forebrain dorsal/ventral pattern formation
GO:0030991 C intraciliary transport particle A
GO:0035721 P intraciliary retrograde transport
GO:0035735 P intraciliary transport involved in cilium assembly
GO:0042995 C cell projection
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072372 C cilium
GO:0097542 C ciliary tip
12648 O_BomoMSG21384_5prime_partial:A_BomoMSG_c26903_g1_i1
198bp
 serine/threonine-protein_kinase_PRP4_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005694 C chromosome
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0008380 P RNA splicing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
12649 O_BomoMSG21385_3prime_partial:A_BomoMSG_c26903_g2_i1
336bp
 serine/threonine-protein_kinase_PRP4_homolog_[Bombyx_mori]
GO:0003146 P heart jogging
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006412 P translation
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0007417 P central nervous system development
GO:0007507 P heart development
GO:0009303 P rRNA transcription
GO:0010468 P regulation of gene expression
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0048565 P digestive tract development
GO:0048703 P embryonic viscerocranium morphogenesis
GO:0060828 P regulation of canonical Wnt signaling pathway
GO:0071733 P obsolete transcriptional activation by promoter-enhancer looping
12650 O_BomoMSG21386_5prime_partial:A_BomoMSG_c26903_g2_i1
122bp
12651 O_BomoMSG21387_complete:A_BomoMSG_c26903_g1_i2
563bp
 serine/threonine-protein_kinase_PRP4_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005694 C chromosome
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0008380 P RNA splicing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
12652 O_BomoMSG21388_3prime_partial:A_BomoMSG_c26903_g1_i2
104bp
12653 O_BomoMSG21389_5prime_partial:A_BomoMSG_c26903_g1_i3
620bp
 serine/threonine-protein_kinase_PRP4_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005694 C chromosome
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0008380 P RNA splicing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
12654 O_BomoMSG2138_internal:A_BomoMSG_c10171_g1_i1
236bp
 LOW_QUALITY_PROTEIN:_protein_bark_beetle_[Bombyx_mori]
GO:0005044 F scavenger receptor activity
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0005918 C septate junction
GO:0005923 C bicellular tight junction
GO:0006898 P receptor-mediated endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030246 F carbohydrate binding
GO:0034976 P response to endoplasmic reticulum stress
GO:0035002 P liquid clearance, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0045217 P cell-cell junction maintenance
GO:0061689 C tricellular tight junction
GO:0090557 P establishment of endothelial intestinal barrier
GO:1904274 P tricellular tight junction assembly
12655 O_BomoMSG21390_3prime_partial:A_BomoMSG_c26903_g1_i3
153bp
12656 O_BomoMSG21391_5prime_partial:A_BomoMSG_c26903_g1_i4
327bp
 serine/threonine-protein_kinase_PRP4_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005694 C chromosome
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0008380 P RNA splicing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
12657 O_BomoMSG21392_internal:A_BomoMSG_c26904_g1_i1
771bp
 claspin-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0007049 P cell cycle
GO:0033314 P mitotic DNA replication checkpoint signaling
12658 O_BomoMSG21393_internal:A_BomoMSG_c26904_g1_i2
251bp
 claspin-like_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0010997 F anaphase-promoting complex binding
GO:0018105 P peptidyl-serine phosphorylation
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0032147 P activation of protein kinase activity
GO:0033314 P mitotic DNA replication checkpoint signaling
12659 O_BomoMSG21394_5prime_partial:A_BomoMSG_c26905_g1_i1
253bp
 splicing_factor_45_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
12660 O_BomoMSG21395_complete:A_BomoMSG_c26905_g1_i2
393bp
 splicing_factor_45_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
previous next from show/29137

- SilkBase 1999-2023 -