SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12421 O_BomoMSG2117_3prime_partial:A_BomoMSG_c10116_g1_i1
147bp
 peroxisome_assembly_protein_12_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0006513 P protein monoubiquitination
GO:0006625 P protein targeting to peroxisome
GO:0007031 P peroxisome organization
GO:0008022 F protein C-terminus binding
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016558 P protein import into peroxisome matrix
GO:0046872 F metal ion binding
GO:1990429 C peroxisomal importomer complex
12422 O_BomoMSG21180_complete:A_BomoMSG_c26856_g1_i2
142bp
12423 O_BomoMSG21181_complete:A_BomoMSG_c26856_g1_i2
105bp
 hypothetical_protein_RR48_05533_[Papilio_machaon]
12424 O_BomoMSG21182_complete:A_BomoMSG_c26856_g1_i3
288bp
 protein_ABHD17B_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
12425 O_BomoMSG21183_5prime_partial:A_BomoMSG_c26857_g1_i2
217bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_F09G8.5_[Bombyx_mori]
12426 O_BomoMSG21184_5prime_partial:A_BomoMSG_c26857_g1_i3
279bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_F09G8.5_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005886 C plasma membrane
GO:0007010 P cytoskeleton organization
GO:0007224 P smoothened signaling pathway
GO:0008360 P regulation of cell shape
GO:0030030 P cell projection organization
GO:0032391 C photoreceptor connecting cilium
GO:0060271 P cilium assembly
12427 O_BomoMSG21185_internal:A_BomoMSG_c26858_g6_i3
221bp
 nucleotide_excision_repair_protein_[Bombyx_mori]
GO:0000111 C nucleotide-excision repair factor 2 complex
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0010777 P meiotic mismatch repair involved in reciprocal meiotic recombination
GO:0071942 C XPC complex
12428 O_BomoMSG21186_internal:A_BomoMSG_c26858_g8_i1
287bp
 nucleotide_excision_repair_protein_[Bombyx_mori]
12429 O_BomoMSG21187_5prime_partial:A_BomoMSG_c26858_g6_i7
369bp
 nucleotide_excision_repair_protein_[Bombyx_mori]
GO:0000111 C nucleotide-excision repair factor 2 complex
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0010777 P meiotic mismatch repair involved in reciprocal meiotic recombination
GO:0071942 C XPC complex
12430 O_BomoMSG21188_5prime_partial:A_BomoMSG_c26858_g6_i8
369bp
 nucleotide_excision_repair_protein_[Bombyx_mori]
GO:0000111 C nucleotide-excision repair factor 2 complex
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0010777 P meiotic mismatch repair involved in reciprocal meiotic recombination
GO:0071942 C XPC complex
12431 O_BomoMSG21189_internal:A_BomoMSG_c26858_g8_i2
236bp
 nucleotide_excision_repair_protein_[Bombyx_mori]
12432 O_BomoMSG2118_complete:A_BomoMSG_c10121_g1_i1
328bp
 D-3-phosphoglycerate_dehydrogenase_[Bombyx_mori]
GO:0004617 F phosphoglycerate dehydrogenase activity
GO:0006564 P L-serine biosynthetic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0016491 F oxidoreductase activity
GO:0016616 F oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
12433 O_BomoMSG21190_5prime_partial:A_BomoMSG_c26859_g1_i1
625bp
 protein_asunder-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007346 P regulation of mitotic cell cycle
GO:0030154 P cell differentiation
GO:0030317 P flagellated sperm motility
GO:0048471 C perinuclear region of cytoplasm
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0080154 P regulation of fertilization
12434 O_BomoMSG21191_3prime_partial:A_BomoMSG_c26859_g1_i1
126bp
12435 O_BomoMSG21192_complete:A_BomoMSG_c26859_g1_i1
120bp
12436 O_BomoMSG21193_complete:A_BomoMSG_c26859_g1_i1
105bp
12437 O_BomoMSG21194_5prime_partial:A_BomoMSG_c26859_g1_i2
479bp
 protein_asunder-like_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0007049 P cell cycle
GO:0007052 P mitotic spindle organization
GO:0007067 P mitotic cell cycle
GO:0007346 P regulation of mitotic cell cycle
GO:0030317 P flagellated sperm motility
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0051301 P cell division
GO:0051642 P centrosome localization
GO:0080154 P regulation of fertilization
GO:0090435 P protein localization to nuclear envelope
12438 O_BomoMSG21195_complete:A_BomoMSG_c26859_g1_i2
120bp
12439 O_BomoMSG21196_complete:A_BomoMSG_c26859_g1_i2
105bp
12440 O_BomoMSG21197_5prime_partial:A_BomoMSG_c26860_g1_i2
166bp
 peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine_amidase_[Bombyx_mori]
GO:0000224 F peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006516 P glycoprotein catabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
12441 O_BomoMSG21198_complete:A_BomoMSG_c26860_g1_i2
128bp
12442 O_BomoMSG21199_complete:A_BomoMSG_c26860_g1_i2
111bp
12443 O_BomoMSG2119_complete:A_BomoMSG_c10121_g1_i1
133bp
 Uncharacterised_protein_[Mycobacterium_abscessus_subsp._abscessus]
12444 O_BomoMSG211_3prime_partial:A_BomoMSG_c952_g1_i1
185bp
 ATP-dependent_DNA_helicase_DDX11_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000790 C chromatin
GO:0000922 C spindle pole
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003723 F RNA binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006139 P nucleobase-containing compound metabolic process
GO:0007049 P cell cycle
GO:0007062 P sister chromatid cohesion
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0016032 P viral process
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030496 C midbody
GO:0032508 P DNA duplex unwinding
GO:0036498 P IRE1-mediated unfolded protein response
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0070062 C extracellular exosome
12445 O_BomoMSG21200_complete:A_BomoMSG_c26862_g1_i1
344bp
 glycerol-3-phosphate_phosphatase_[Bombyx_mori]
GO:0000121 F glycerol-1-phosphatase activity
GO:0000287 F magnesium ion binding
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0006114 P glycerol biosynthetic process
GO:0006650 P glycerophospholipid metabolic process
GO:0008152 P metabolic process
GO:0008967 F phosphoglycolate phosphatase activity
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0043136 F glycerol-3-phosphatase activity
GO:0045721 P negative regulation of gluconeogenesis
GO:0046872 F metal ion binding
GO:0098519 F nucleotide phosphatase activity, acting on free nucleotides
12446 O_BomoMSG21201_internal:A_BomoMSG_c26865_g1_i1
382bp
 LOW_QUALITY_PROTEIN:_integrator_complex_subunit_8_[Bombyx_mori]
GO:0005634 C nucleus
12447 O_BomoMSG21202_3prime_partial:A_BomoMSG_c26865_g1_i2
623bp
 LOW_QUALITY_PROTEIN:_integrator_complex_subunit_8_[Bombyx_mori]
GO:0005634 C nucleus
12448 O_BomoMSG21203_internal:A_BomoMSG_c26865_g1_i4
188bp
 LOW_QUALITY_PROTEIN:_integrator_complex_subunit_8_[Bombyx_mori]
12449 O_BomoMSG21204_internal:A_BomoMSG_c26866_g1_i1
610bp
 hypothetical_protein_RR48_06329_[Papilio_machaon]
12450 O_BomoMSG21205_complete:A_BomoMSG_c26866_g1_i1
109bp
previous next from show/29137

- SilkBase 1999-2023 -