SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12001 O_BomoMSG20801_complete:A_BomoMSG_c26768_g1_i6
113bp
12002 O_BomoMSG20802_5prime_partial:A_BomoMSG_c26768_g1_i7
3223bp
 basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein-like_isoform_X2_[Bombyx_mori]
GO:0001523 P retinoid metabolic process
GO:0001525 P angiogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0008022 F protein C-terminus binding
GO:0022617 P extracellular matrix disassembly
GO:0030198 P extracellular matrix organization
GO:0030203 P glycosaminoglycan metabolic process
GO:0031012 C extracellular matrix
GO:0042157 P lipoprotein metabolic process
GO:0043202 C lysosomal lumen
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
12003 O_BomoMSG20803_complete:A_BomoMSG_c26768_g1_i7
149bp
12004 O_BomoMSG20804_complete:A_BomoMSG_c26768_g1_i7
135bp
12005 O_BomoMSG20805_complete:A_BomoMSG_c26768_g1_i7
130bp
12006 O_BomoMSG20806_complete:A_BomoMSG_c26768_g1_i7
130bp
12007 O_BomoMSG20807_complete:A_BomoMSG_c26768_g1_i7
129bp
12008 O_BomoMSG20808_complete:A_BomoMSG_c26768_g1_i7
119bp
12009 O_BomoMSG20809_complete:A_BomoMSG_c26768_g1_i7
113bp
12010 O_BomoMSG2080_complete:A_BomoMSG_c10020_g1_i1
140bp
 protein_LLP_homolog_[Bombyx_mori]
12011 O_BomoMSG20810_complete:A_BomoMSG_c26769_g2_i1
574bp
 uncharacterized_protein_LOC101744278_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008150 P biological_process
GO:0070062 C extracellular exosome
12012 O_BomoMSG20811_5prime_partial:A_BomoMSG_c26769_g2_i2
245bp
 uncharacterized_protein_LOC101744278_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008150 P biological_process
GO:0070062 C extracellular exosome
12013 O_BomoMSG20812_complete:A_BomoMSG_c26769_g2_i3
341bp
 uncharacterized_protein_LOC101744278_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008150 P biological_process
GO:0070062 C extracellular exosome
12014 O_BomoMSG20813_internal:A_BomoMSG_c26770_g1_i1
312bp
 LOW_QUALITY_PROTEIN:_PHD_and_RING_finger_domain-containing_protein_1_[Bombyx_mori]
12015 O_BomoMSG20814_3prime_partial:A_BomoMSG_c26770_g1_i1
291bp
 LOW_QUALITY_PROTEIN:_PHD_and_RING_finger_domain-containing_protein_1_[Bombyx_mori]
12016 O_BomoMSG20815_5prime_partial:A_BomoMSG_c26770_g1_i1
224bp
12017 O_BomoMSG20816_internal:A_BomoMSG_c26770_g1_i2
622bp
 LOW_QUALITY_PROTEIN:_PHD_and_RING_finger_domain-containing_protein_1_[Bombyx_mori]
12018 O_BomoMSG20817_3prime_partial:A_BomoMSG_c26770_g1_i2
291bp
 LOW_QUALITY_PROTEIN:_PHD_and_RING_finger_domain-containing_protein_1_[Bombyx_mori]
12019 O_BomoMSG20818_5prime_partial:A_BomoMSG_c26770_g1_i2
224bp
12020 O_BomoMSG20819_5prime_partial:A_BomoMSG_c26772_g2_i1
110bp
 meiosis-specific_with_OB_domain-containing_protein_isoform_X1_[Bombyx_mori]
12021 O_BomoMSG2081_complete:A_BomoMSG_c10021_g1_i1
116bp
 unknown_unsecreted_protein_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030127 C COPII vesicle coat
GO:0031410 C cytoplasmic vesicle
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0070072 P vacuolar proton-transporting V-type ATPase complex assembly
12022 O_BomoMSG20820_complete:A_BomoMSG_c26772_g3_i4
468bp
 methionine_aminopeptidase_2_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008235 F metalloexopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070006 F metalloaminopeptidase activity
GO:0070084 P protein initiator methionine removal
12023 O_BomoMSG20821_complete:A_BomoMSG_c26772_g3_i5
468bp
 methionine_aminopeptidase_2_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008235 F metalloexopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070006 F metalloaminopeptidase activity
GO:0070084 P protein initiator methionine removal
12024 O_BomoMSG20822_complete:A_BomoMSG_c26772_g3_i7
468bp
 methionine_aminopeptidase_2_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008235 F metalloexopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070006 F metalloaminopeptidase activity
GO:0070084 P protein initiator methionine removal
12025 O_BomoMSG20823_internal:A_BomoMSG_c26773_g2_i1
115bp
12026 O_BomoMSG20824_internal:A_BomoMSG_c26773_g2_i1
115bp
 glycine-rich_cell_wall_structural_protein_1.0-like_[Bombyx_mori]
12027 O_BomoMSG20825_internal:A_BomoMSG_c26773_g2_i2
142bp
12028 O_BomoMSG20826_internal:A_BomoMSG_c26773_g2_i2
142bp
 putative_glycine-rich_cell_wall_structural_protein_1_[Bombyx_mori]
12029 O_BomoMSG20827_internal:A_BomoMSG_c26773_g2_i2
142bp
12030 O_BomoMSG20828_5prime_partial:A_BomoMSG_c26773_g2_i2
105bp
previous next from show/29137

- SilkBase 1999-2023 -