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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11821 O_BomoMSG2063_internal:A_BomoMSG_c9973_g1_i1
128bp
 serine/threonine-protein_kinase_fused_[Bombyx_mori]
11822 O_BomoMSG20640_internal:A_BomoMSG_c26737_g1_i3
552bp
 LOW_QUALITY_PROTEIN:_rap_guanine_nucleotide_exchange_factor_2_[Bombyx_mori]
GO:0001568 P blood vessel development
GO:0001764 P neuron migration
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005088 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008285 P negative regulation of cell population proliferation
GO:0010976 P positive regulation of neuron projection development
GO:0016020 C membrane
GO:0017034 F guanyl-nucleotide exchange factor activity
GO:0019901 F protein kinase binding
GO:0019933 P cAMP-mediated signaling
GO:0021591 P ventricular system development
GO:0021884 P forebrain neuron development
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030165 F PDZ domain binding
GO:0030552 F cAMP binding
GO:0031175 P neuron projection development
GO:0031547 P brain-derived neurotrophic factor receptor signaling pathway
GO:0031697 F beta-1 adrenergic receptor binding
GO:0032092 P positive regulation of protein binding
GO:0032486 P Rap protein signal transduction
GO:0038180 P nerve growth factor signaling pathway
GO:0042127 P regulation of cell population proliferation
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0043950 P positive regulation of cAMP-mediated signaling
GO:0045202 C synapse
GO:0045860 P positive regulation of protein kinase activity
GO:0048022 P negative regulation of melanin biosynthetic process
GO:0048167 P regulation of synaptic plasticity
GO:0048471 C perinuclear region of cytoplasm
GO:0050699 F WW domain binding
GO:0050774 P negative regulation of dendrite morphogenesis
GO:0061028 P establishment of endothelial barrier
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0071320 P cellular response to cAMP
GO:0071321 P cellular response to cGMP
GO:0071880 P adenylate cyclase-activating adrenergic receptor signaling pathway
GO:1901888 P regulation of cell junction assembly
GO:1990090 P cellular response to nerve growth factor stimulus
GO:2000481 P positive regulation of cAMP-dependent protein kinase activity
GO:2000670 P positive regulation of dendritic cell apoptotic process
GO:2001214 P positive regulation of vasculogenesis
GO:2001224 P positive regulation of neuron migration
11823 O_BomoMSG20641_internal:A_BomoMSG_c26737_g1_i5
316bp
 LOW_QUALITY_PROTEIN:_rap_guanine_nucleotide_exchange_factor_2_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0001568 P blood vessel development
GO:0001764 P neuron migration
GO:0004871 F obsolete signal transducer activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005088 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005911 C cell-cell junction
GO:0005923 C bicellular tight junction
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008285 P negative regulation of cell population proliferation
GO:0010976 P positive regulation of neuron projection development
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0017034 F guanyl-nucleotide exchange factor activity
GO:0019933 P cAMP-mediated signaling
GO:0019992 F diacylglycerol binding
GO:0021591 P ventricular system development
GO:0021884 P forebrain neuron development
GO:0030033 P microvillus assembly
GO:0030054 C cell junction
GO:0030139 C endocytic vesicle
GO:0030154 P cell differentiation
GO:0030165 F PDZ domain binding
GO:0030552 F cAMP binding
GO:0030553 F cGMP binding
GO:0031175 P neuron projection development
GO:0031547 P brain-derived neurotrophic factor receptor signaling pathway
GO:0031697 F beta-1 adrenergic receptor binding
GO:0032092 P positive regulation of protein binding
GO:0032486 P Rap protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0038180 P nerve growth factor signaling pathway
GO:0042127 P regulation of cell population proliferation
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0043950 P positive regulation of cAMP-mediated signaling
GO:0045202 C synapse
GO:0045860 P positive regulation of protein kinase activity
GO:0048022 P negative regulation of melanin biosynthetic process
GO:0048167 P regulation of synaptic plasticity
GO:0048471 C perinuclear region of cytoplasm
GO:0050699 F WW domain binding
GO:0050774 P negative regulation of dendrite morphogenesis
GO:0061028 P establishment of endothelial barrier
GO:0070300 F phosphatidic acid binding
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0071320 P cellular response to cAMP
GO:0071321 P cellular response to cGMP
GO:0071880 P adenylate cyclase-activating adrenergic receptor signaling pathway
GO:0072659 P protein localization to plasma membrane
GO:0090557 P establishment of endothelial intestinal barrier
GO:1901888 P regulation of cell junction assembly
GO:1990090 P cellular response to nerve growth factor stimulus
GO:2000481 P positive regulation of cAMP-dependent protein kinase activity
GO:2000670 P positive regulation of dendritic cell apoptotic process
GO:2001214 P positive regulation of vasculogenesis
GO:2001224 P positive regulation of neuron migration
11824 O_BomoMSG20642_5prime_partial:A_BomoMSG_c26738_g1_i3
231bp
 cuticular_protein_RR-1_motif_34_precursor_[Bombyx_mori]
GO:0042302 F structural constituent of cuticle
11825 O_BomoMSG20643_3prime_partial:A_BomoMSG_c26739_g1_i1
429bp
 myotubularin-related_protein_3_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0046872 F metal ion binding
11826 O_BomoMSG20644_5prime_partial:A_BomoMSG_c26739_g1_i1
172bp
11827 O_BomoMSG20645_complete:A_BomoMSG_c26739_g1_i1
143bp
11828 O_BomoMSG20646_3prime_partial:A_BomoMSG_c26739_g1_i2
373bp
 myotubularin-related_protein_3_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0046872 F metal ion binding
11829 O_BomoMSG20647_5prime_partial:A_BomoMSG_c26739_g1_i2
172bp
11830 O_BomoMSG20648_complete:A_BomoMSG_c26739_g1_i2
143bp
11831 O_BomoMSG20649_complete:A_BomoMSG_c26740_g2_i1
516bp
 fatty-acid_amide_hydrolase_2_isoform_X3_[Bombyx_mori]
GO:0005811 C lipid droplet
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016884 F carbon-nitrogen ligase activity, with glutamine as amido-N-donor
GO:0017064 F fatty acid amide hydrolase activity
GO:0019369 P arachidonic acid metabolic process
11832 O_BomoMSG2064_complete:A_BomoMSG_c9975_g1_i1
275bp
 uncharacterized_protein_LOC110385101_[Bombyx_mori]
11833 O_BomoMSG20650_complete:A_BomoMSG_c26740_g2_i2
546bp
 fatty-acid_amide_hydrolase_2_isoform_X1_[Bombyx_mori]
GO:0005811 C lipid droplet
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016884 F carbon-nitrogen ligase activity, with glutamine as amido-N-donor
GO:0017064 F fatty acid amide hydrolase activity
GO:0019369 P arachidonic acid metabolic process
11834 O_BomoMSG20651_internal:A_BomoMSG_c26740_g3_i1
787bp
 autophagy-related_protein_2_homolog_A_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0000422 P autophagy of mitochondrion
GO:0006914 P autophagy
GO:0019898 C extrinsic component of membrane
GO:0044804 P autophagy of nucleus
11835 O_BomoMSG20652_5prime_partial:A_BomoMSG_c26740_g3_i1
131bp
11836 O_BomoMSG20653_3prime_partial:A_BomoMSG_c26740_g3_i2
299bp
 autophagy-related_protein_2_homolog_A_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0000422 P autophagy of mitochondrion
GO:0003674 F molecular_function
GO:0005811 C lipid droplet
GO:0006914 P autophagy
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0034045 C phagophore assembly site membrane
GO:0044804 P autophagy of nucleus
11837 O_BomoMSG20654_5prime_partial:A_BomoMSG_c26740_g3_i2
131bp
11838 O_BomoMSG20655_3prime_partial:A_BomoMSG_c26741_g1_i1
383bp
 proteasomal_ATPase-associated_factor_1_[Bombyx_mori]
GO:0000502 C proteasome complex
11839 O_BomoMSG20656_complete:A_BomoMSG_c26743_g1_i2
214bp
 uncharacterized_protein_LOC101739492_[Bombyx_mori]
11840 O_BomoMSG20657_internal:A_BomoMSG_c26744_g1_i1
124bp
 Copia_protein,_partial_[Cyphomyrmex_costatus]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
11841 O_BomoMSG20658_internal:A_BomoMSG_c26744_g1_i2
544bp
 Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
11842 O_BomoMSG20659_5prime_partial:A_BomoMSG_c26744_g1_i4
723bp
 Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
11843 O_BomoMSG2065_complete:A_BomoMSG_c9975_g1_i1
114bp
11844 O_BomoMSG20660_complete:A_BomoMSG_c26745_g1_i1
385bp
 RecQ_mediated_genome_instability_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
11845 O_BomoMSG20661_complete:A_BomoMSG_c26745_g1_i1
136bp
11846 O_BomoMSG20662_3prime_partial:A_BomoMSG_c26745_g1_i2
395bp
 RecQ_mediated_genome_instability_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
11847 O_BomoMSG20663_5prime_partial:A_BomoMSG_c26745_g1_i2
118bp
11848 O_BomoMSG20664_complete:A_BomoMSG_c26746_g8_i1
139bp
 DNA-directed_RNA_polymerase_II_16_kDa_polypeptide_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005700 C polytene chromosome
GO:0005701 C polytene chromosome chromocenter
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0022008 P neurogenesis
GO:0035079 P polytene chromosome puffing
GO:0044237 P cellular metabolic process
11849 O_BomoMSG20665_complete:A_BomoMSG_c26746_g1_i5
294bp
 uncharacterized_protein_LOC101735678_[Bombyx_mori]
GO:0003231 P cardiac ventricle development
GO:0005739 C mitochondrion
GO:0005886 C plasma membrane
GO:0014704 C intercalated disc
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1903779 P regulation of cardiac conduction
11850 O_BomoMSG20666_complete:A_BomoMSG_c26746_g8_i2
139bp
 DNA-directed_RNA_polymerase_II_16_kDa_polypeptide_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005700 C polytene chromosome
GO:0005701 C polytene chromosome chromocenter
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0022008 P neurogenesis
GO:0035079 P polytene chromosome puffing
GO:0044237 P cellular metabolic process
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