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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
11671 O_BomoMSG20504_internal:A_BomoMSG_c26707_g1_i1
513bp
 pentatricopeptide_repeat-containing_protein_1,_mitochondrial_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008033 P tRNA processing
GO:0042780 P tRNA 3'-end processing
11672 O_BomoMSG20505_3prime_partial:A_BomoMSG_c26707_g1_i2
686bp
 pentatricopeptide_repeat-containing_protein_1,_mitochondrial_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008033 P tRNA processing
GO:0042780 P tRNA 3'-end processing
11673 O_BomoMSG20506_3prime_partial:A_BomoMSG_c26708_g1_i1
616bp
 kanadaptin_isoform_X3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0043231 C intracellular membrane-bounded organelle
11674 O_BomoMSG20507_3prime_partial:A_BomoMSG_c26708_g1_i2
616bp
 kanadaptin_isoform_X3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0043231 C intracellular membrane-bounded organelle
11675 O_BomoMSG20508_internal:A_BomoMSG_c26709_g1_i1
385bp
 protein_mahjong_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008180 C COP9 signalosome
GO:0016032 P viral process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016567 P protein ubiquitination
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0030183 P B cell differentiation
GO:0033151 P V(D)J recombination
GO:0035212 P cell competition in a multicellular organism
GO:1990244 F histone kinase activity (H2A-T120 specific)
GO:1990245 P histone H2A-T120 phosphorylation
11676 O_BomoMSG20509_5prime_partial:A_BomoMSG_c26709_g1_i1
183bp
11677 O_BomoMSG2050_5prime_partial:A_BomoMSG_c9925_g1_i1
164bp
11678 O_BomoMSG20510_complete:A_BomoMSG_c26709_g1_i1
146bp
11679 O_BomoMSG20511_5prime_partial:A_BomoMSG_c26709_g1_i1
126bp
11680 O_BomoMSG20512_internal:A_BomoMSG_c26709_g1_i2
415bp
 protein_mahjong_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008180 C COP9 signalosome
GO:0016032 P viral process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016567 P protein ubiquitination
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0030183 P B cell differentiation
GO:0033151 P V(D)J recombination
GO:0035212 P cell competition in a multicellular organism
GO:1990244 F histone kinase activity (H2A-T120 specific)
GO:1990245 P histone H2A-T120 phosphorylation
11681 O_BomoMSG20513_5prime_partial:A_BomoMSG_c26709_g1_i2
213bp
11682 O_BomoMSG20514_complete:A_BomoMSG_c26709_g1_i2
146bp
11683 O_BomoMSG20515_5prime_partial:A_BomoMSG_c26709_g1_i2
126bp
11684 O_BomoMSG20516_5prime_partial:A_BomoMSG_c26710_g1_i1
574bp
 putative_leucine-rich_repeat-containing_protein_DDB_G0290503_[Bombyx_mori]
11685 O_BomoMSG20517_5prime_partial:A_BomoMSG_c26711_g1_i1
341bp
 enhancer_of_mRNA-decapping_protein_4_[Bombyx_mori]
GO:0000932 C P-body
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
11686 O_BomoMSG20518_3prime_partial:A_BomoMSG_c26711_g1_i1
140bp
11687 O_BomoMSG20519_5prime_partial:A_BomoMSG_c26711_g1_i3
249bp
 enhancer_of_mRNA-decapping_protein_4_[Bombyx_mori]
GO:0000932 C P-body
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
11688 O_BomoMSG2051_3prime_partial:A_BomoMSG_c9925_g1_i1
128bp
11689 O_BomoMSG20520_5prime_partial:A_BomoMSG_c26711_g1_i4
230bp
 enhancer_of_mRNA-decapping_protein_4_[Bombyx_mori]
GO:0000932 C P-body
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
11690 O_BomoMSG20521_complete:A_BomoMSG_c26711_g1_i5
337bp
 enhancer_of_mRNA-decapping_protein_4_[Bombyx_mori]
GO:0000932 C P-body
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
11691 O_BomoMSG20522_complete:A_BomoMSG_c26711_g1_i5
141bp
11692 O_BomoMSG20523_5prime_partial:A_BomoMSG_c26711_g1_i6
103bp
 enhancer_of_mRNA-decapping_protein_4-like_[Helicoverpa_armigera]
11693 O_BomoMSG20524_complete:A_BomoMSG_c26711_g1_i7
337bp
 enhancer_of_mRNA-decapping_protein_4_[Bombyx_mori]
GO:0000932 C P-body
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
11694 O_BomoMSG20525_complete:A_BomoMSG_c26711_g1_i7
156bp
11695 O_BomoMSG20526_complete:A_BomoMSG_c26711_g2_i1
102bp
11696 O_BomoMSG20527_complete:A_BomoMSG_c26712_g1_i1
635bp
 alkyldihydroxyacetonephosphate_synthase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005777 C peroxisome
GO:0006629 P lipid metabolic process
GO:0008609 F alkylglycerone-phosphate synthase activity
GO:0008610 P lipid biosynthetic process
GO:0008611 P ether lipid biosynthetic process
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0016740 F transferase activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
GO:0071949 F FAD binding
11697 O_BomoMSG20528_complete:A_BomoMSG_c26712_g1_i1
153bp
11698 O_BomoMSG20529_complete:A_BomoMSG_c26712_g1_i1
109bp
11699 O_BomoMSG2052_5prime_partial:A_BomoMSG_c9925_g1_i1
120bp
 vesicle_amine_transport_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
11700 O_BomoMSG20530_5prime_partial:A_BomoMSG_c26712_g1_i2
231bp
 alkyldihydroxyacetonephosphate_synthase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005777 C peroxisome
GO:0006629 P lipid metabolic process
GO:0008609 F alkylglycerone-phosphate synthase activity
GO:0008610 P lipid biosynthetic process
GO:0008611 P ether lipid biosynthetic process
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0016740 F transferase activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
GO:0071949 F FAD binding
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