SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10831 O_BomoMSG1974_internal:A_BomoMSG_c9657_g1_i1
130bp
 serine/threonine-protein_kinase_ATR_[Bombyx_mori]
GO:0000076 P DNA replication checkpoint signaling
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0000706 P meiotic DNA double-strand break processing
GO:0000723 P telomere maintenance
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007015 P actin filament organization
GO:0007088 P regulation of mitotic nuclear division
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007126 P meiotic cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0007275 P multicellular organism development
GO:0007348 P regulation of syncytial blastoderm mitotic cell cycle
GO:0007349 P cellularization
GO:0007444 P imaginal disc development
GO:0008360 P regulation of cell shape
GO:0009314 P response to radiation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016321 P female meiosis chromosome segregation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0030261 P chromosome condensation
GO:0031000 P response to caffeine
GO:0033314 P mitotic DNA replication checkpoint signaling
GO:0045002 P double-strand break repair via single-strand annealing
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:0048477 P oogenesis
10832 O_BomoMSG19750_complete:A_BomoMSG_c26508_g1_i5
363bp
 transposase_[Ceratitis_rosa]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
GO:0032502 P developmental process
10833 O_BomoMSG19751_5prime_partial:A_BomoMSG_c26509_g1_i3
237bp
 diacylglycerol_O-acyltransferase_1_isoform_X1_[Bombyx_mori]
GO:0003846 F 2-acylglycerol O-acyltransferase activity
GO:0004144 F diacylglycerol O-acyltransferase activity
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006641 P triglyceride metabolic process
GO:0008374 F O-acyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0019432 P triglyceride biosynthetic process
GO:0019915 P lipid storage
GO:0034379 P very-low-density lipoprotein particle assembly
GO:0035336 P long-chain fatty-acyl-CoA metabolic process
GO:0036155 P acylglycerol acyl-chain remodeling
GO:0042572 P retinol metabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0046339 P diacylglycerol metabolic process
GO:0046486 P glycerolipid metabolic process
GO:0050252 F retinol O-fatty-acyltransferase activity
GO:0055089 P fatty acid homeostasis
10834 O_BomoMSG19752_complete:A_BomoMSG_c26510_g1_i1
276bp
 transmembrane_protein_165-like_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006487 P protein N-linked glycosylation
GO:0006874 P cellular calcium ion homeostasis
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0032472 P Golgi calcium ion transport
GO:0032588 C trans-Golgi network membrane
GO:0035751 P regulation of lysosomal lumen pH
GO:0043231 C intracellular membrane-bounded organelle
10835 O_BomoMSG19753_5prime_partial:A_BomoMSG_c26510_g1_i1
167bp
10836 O_BomoMSG19754_complete:A_BomoMSG_c26510_g1_i1
147bp
10837 O_BomoMSG19755_internal:A_BomoMSG_c26510_g1_i2
136bp
10838 O_BomoMSG19756_5prime_partial:A_BomoMSG_c26510_g1_i3
220bp
 transmembrane_protein_165-like_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006487 P protein N-linked glycosylation
GO:0006874 P cellular calcium ion homeostasis
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0032472 P Golgi calcium ion transport
GO:0032588 C trans-Golgi network membrane
GO:0035751 P regulation of lysosomal lumen pH
GO:0043231 C intracellular membrane-bounded organelle
10839 O_BomoMSG19757_5prime_partial:A_BomoMSG_c26510_g1_i3
167bp
10840 O_BomoMSG19758_5prime_partial:A_BomoMSG_c26511_g1_i2
103bp
 uncharacterized_protein_LOC101736090_isoform_X4_[Bombyx_mori]
10841 O_BomoMSG19759_complete:A_BomoMSG_c26512_g1_i1
242bp
 PREDICTED:_uncharacterized_protein_LOC106717559_[Papilio_machaon]
10842 O_BomoMSG1975_internal:A_BomoMSG_c9659_g1_i1
236bp
 ankyrin-3_isoform_X1_[Bombyx_mori]
GO:0002027 P regulation of heart rate
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006874 P cellular calcium ion homeostasis
GO:0007165 P signal transduction
GO:0008093 F cytoskeletal anchor activity
GO:0008104 P protein localization
GO:0010628 P positive regulation of gene expression
GO:0010881 P regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
GO:0010882 P regulation of cardiac muscle contraction by calcium ion signaling
GO:0014704 C intercalated disc
GO:0015459 F potassium channel regulator activity
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0030018 C Z disc
GO:0030054 C cell junction
GO:0030315 C T-tubule
GO:0030507 F spectrin binding
GO:0030674 F protein-macromolecule adaptor activity
GO:0031430 C M band
GO:0031647 P regulation of protein stability
GO:0031672 C A band
GO:0033292 P T-tubule organization
GO:0034394 P protein localization to cell surface
GO:0034613 P cellular protein localization
GO:0036309 P protein localization to M-band
GO:0036371 P protein localization to T-tubule
GO:0042383 C sarcolemma
GO:0042981 P regulation of apoptotic process
GO:0043034 C costamere
GO:0043268 P positive regulation of potassium ion transport
GO:0044325 F transmembrane transporter binding
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0048471 C perinuclear region of cytoplasm
GO:0050821 P protein stabilization
GO:0051117 F ATPase binding
GO:0051924 P regulation of calcium ion transport
GO:0051928 P positive regulation of calcium ion transport
GO:0055117 P regulation of cardiac muscle contraction
GO:0060048 P cardiac muscle contraction
GO:0070972 P protein localization to endoplasmic reticulum
GO:0072659 P protein localization to plasma membrane
GO:0072661 P protein localization to plasma membrane
GO:0086004 P regulation of cardiac muscle cell contraction
GO:0086014 P atrial cardiac muscle cell action potential
GO:0086015 P SA node cell action potential
GO:0086036 P regulation of cardiac muscle cell membrane potential
GO:0086066 P atrial cardiac muscle cell to AV node cell communication
GO:0086070 P SA node cell to atrial cardiac muscle cell communication
GO:0086091 P regulation of heart rate by cardiac conduction
GO:0097481 C postsynaptic density
GO:0098904 P regulation of AV node cell action potential
GO:0098907 P regulation of SA node cell action potential
GO:0098910 P regulation of atrial cardiac muscle cell action potential
GO:1901018 P positive regulation of potassium ion transmembrane transporter activity
GO:1901019 P regulation of calcium ion transmembrane transporter activity
GO:1901021 P positive regulation of calcium ion transmembrane transporter activity
GO:2001257 P regulation of cation channel activity
GO:2001259 P positive regulation of cation channel activity
10843 O_BomoMSG19760_complete:A_BomoMSG_c26512_g1_i2
242bp
 PREDICTED:_uncharacterized_protein_LOC106717559_[Papilio_machaon]
10844 O_BomoMSG19761_complete:A_BomoMSG_c26512_g1_i3
242bp
 PREDICTED:_uncharacterized_protein_LOC106717559_[Papilio_machaon]
10845 O_BomoMSG19762_3prime_partial:A_BomoMSG_c26513_g1_i2
287bp
 uncharacterized_protein_LOC110382774,_partial_[Helicoverpa_armigera]
10846 O_BomoMSG19763_5prime_partial:A_BomoMSG_c26513_g1_i2
137bp
10847 O_BomoMSG19764_internal:A_BomoMSG_c26513_g1_i3
266bp
 uncharacterized_protein_LOC101739152_[Bombyx_mori]
10848 O_BomoMSG19765_5prime_partial:A_BomoMSG_c26513_g1_i3
137bp
10849 O_BomoMSG19766_3prime_partial:A_BomoMSG_c26513_g1_i4
287bp
 uncharacterized_protein_LOC110382774,_partial_[Helicoverpa_armigera]
10850 O_BomoMSG19767_5prime_partial:A_BomoMSG_c26513_g1_i4
137bp
10851 O_BomoMSG19768_internal:A_BomoMSG_c26513_g1_i5
292bp
 uncharacterized_protein_LOC110382774,_partial_[Helicoverpa_armigera]
10852 O_BomoMSG19769_5prime_partial:A_BomoMSG_c26513_g1_i5
137bp
10853 O_BomoMSG1976_internal:A_BomoMSG_c9661_g1_i1
171bp
 endothelial_zinc_finger_protein_induced_by_tumor_necrosis_factor_alpha-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
10854 O_BomoMSG19770_internal:A_BomoMSG_c26514_g1_i1
268bp
 CCAAT/enhancer-binding_protein_zeta_isoform_X2_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
10855 O_BomoMSG19771_3prime_partial:A_BomoMSG_c26514_g1_i1
129bp
10856 O_BomoMSG19772_5prime_partial:A_BomoMSG_c26514_g2_i1
135bp
 CCAAT/enhancer-binding_protein_zeta_isoform_X1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
10857 O_BomoMSG19773_5prime_partial:A_BomoMSG_c26514_g2_i1
100bp
10858 O_BomoMSG19774_internal:A_BomoMSG_c26514_g1_i2
297bp
 CCAAT/enhancer-binding_protein_zeta_isoform_X2_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
10859 O_BomoMSG19775_3prime_partial:A_BomoMSG_c26514_g1_i2
129bp
10860 O_BomoMSG19776_internal:A_BomoMSG_c26515_g1_i1
1061bp
 LOW_QUALITY_PROTEIN:_protein_4.1_homolog_[Bombyx_mori]
GO:0003015 P heart process
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005918 C septate junction
GO:0005920 C smooth septate junction
GO:0006612 P protein targeting to membrane
GO:0007163 P establishment or maintenance of cell polarity
GO:0007275 P multicellular organism development
GO:0007391 P dorsal closure
GO:0007435 P salivary gland morphogenesis
GO:0007527 P adult somatic muscle development
GO:0008092 F cytoskeletal protein binding
GO:0008362 P chitin-based embryonic cuticle biosynthetic process
GO:0009790 P embryo development
GO:0019991 P septate junction assembly
GO:0030054 C cell junction
GO:0035151 P regulation of tube size, open tracheal system
GO:0035321 P maintenance of imaginal disc-derived wing hair orientation
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045216 P cell-cell junction organization
GO:0060857 P establishment of glial blood-brain barrier
GO:0061343 P cell adhesion involved in heart morphogenesis
previous next from show/29137

- SilkBase 1999-2023 -