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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10531 O_BomoMSG1947_complete:A_BomoMSG_c9516_g1_i1
188bp
 prefoldin_subunit_3_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006457 P protein folding
GO:0007017 P microtubule-based process
GO:0007021 P tubulin complex assembly
GO:0016272 C prefoldin complex
GO:0048487 F beta-tubulin binding
GO:0051297 P centrosome cycle
GO:0090306 P meiotic spindle assembly
GO:0090307 P mitotic spindle assembly
10532 O_BomoMSG19480_complete:A_BomoMSG_c26445_g1_i3
148bp
 probable_phenylalanine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004826 F phenylalanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006432 P phenylalanyl-tRNA aminoacylation
GO:0008033 P tRNA processing
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
10533 O_BomoMSG19481_3prime_partial:A_BomoMSG_c26446_g1_i1
251bp
 glycerol-3-phosphate_acyltransferase_3_isoform_X3_[Bombyx_mori]
GO:0002071 P glandular epithelial cell maturation
GO:0004366 F glycerol-3-phosphate O-acyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006637 P acyl-CoA metabolic process
GO:0006641 P triglyceride metabolic process
GO:0006656 P phosphatidylcholine biosynthetic process
GO:0007595 P lactation
GO:0008152 P metabolic process
GO:0008610 P lipid biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016024 P CDP-diacylglycerol biosynthetic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0019432 P triglyceride biosynthetic process
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0030879 P mammary gland development
GO:0040014 P regulation of multicellular organism growth
GO:0046339 P diacylglycerol metabolic process
10534 O_BomoMSG19482_complete:A_BomoMSG_c26446_g1_i3
480bp
 glycerol-3-phosphate_acyltransferase_3_isoform_X2_[Bombyx_mori]
GO:0002071 P glandular epithelial cell maturation
GO:0004366 F glycerol-3-phosphate O-acyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006637 P acyl-CoA metabolic process
GO:0006641 P triglyceride metabolic process
GO:0006656 P phosphatidylcholine biosynthetic process
GO:0007595 P lactation
GO:0008152 P metabolic process
GO:0008610 P lipid biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016024 P CDP-diacylglycerol biosynthetic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0019432 P triglyceride biosynthetic process
GO:0030879 P mammary gland development
GO:0040014 P regulation of multicellular organism growth
GO:0046339 P diacylglycerol metabolic process
10535 O_BomoMSG19483_5prime_partial:A_BomoMSG_c26446_g1_i3
162bp
10536 O_BomoMSG19484_5prime_partial:A_BomoMSG_c26447_g1_i2
155bp
 R2D2_protein_isoform_X1_[Bombyx_mori]
10537 O_BomoMSG19485_5prime_partial:A_BomoMSG_c26447_g1_i2
138bp
 hypothetical_protein_AK812_SmicGene7015_[Symbiodinium_microadriaticum]
10538 O_BomoMSG19486_internal:A_BomoMSG_c26447_g1_i3
102bp
 hypothetical_protein_AK812_SmicGene7015_[Symbiodinium_microadriaticum]
10539 O_BomoMSG19487_complete:A_BomoMSG_c26447_g1_i4
315bp
 R2D2_protein_isoform_X1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0034599 P cellular response to oxidative stress
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042473 P outer ear morphogenesis
GO:0042474 P middle ear morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048705 P skeletal system morphogenesis
GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
10540 O_BomoMSG19488_complete:A_BomoMSG_c26447_g1_i4
171bp
10541 O_BomoMSG19489_5prime_partial:A_BomoMSG_c26447_g1_i4
135bp
 hypothetical_protein_AK812_SmicGene7015_[Symbiodinium_microadriaticum]
10542 O_BomoMSG1948_internal:A_BomoMSG_c9521_g1_i1
138bp
 uncharacterized_protein_LOC101737848_[Bombyx_mori]
10543 O_BomoMSG19490_internal:A_BomoMSG_c26448_g1_i1
210bp
 seminal_fluid_protein_CSSFP041_[Danaus_plexippus_plexippus]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
10544 O_BomoMSG19491_5prime_partial:A_BomoMSG_c26448_g1_i3
216bp
 serine_protease_inhibitor_26_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
10545 O_BomoMSG19492_complete:A_BomoMSG_c26448_g1_i4
393bp
 serine_protease_inhibitor_26_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
10546 O_BomoMSG19493_3prime_partial:A_BomoMSG_c26449_g1_i1
516bp
 homeodomain-interacting_protein_kinase_2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001105 F transcription coactivator activity
GO:0001654 P eye development
GO:0001934 P positive regulation of protein phosphorylation
GO:0003714 F transcription corepressor activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0006978 P DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007224 P smoothened signaling pathway
GO:0007628 P adult walking behavior
GO:0008284 P positive regulation of cell population proliferation
GO:0008344 P adult locomotory behavior
GO:0009952 P anterior/posterior pattern specification
GO:0010842 P retina layer formation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016604 C nuclear body
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0018107 P peptidyl-threonine phosphorylation
GO:0019048 P modulation by virus of host process
GO:0030182 P neuron differentiation
GO:0030218 P erythrocyte differentiation
GO:0030511 P positive regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 P negative regulation of BMP signaling pathway
GO:0030578 P PML body organization
GO:0032092 P positive regulation of protein binding
GO:0042771 P intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0043388 P positive regulation of DNA binding
GO:0043524 P negative regulation of neuron apoptotic process
GO:0045766 P positive regulation of angiogenesis
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046330 P positive regulation of JNK cascade
GO:0046332 F SMAD binding
GO:0046790 F virion binding
GO:0048596 P embryonic camera-type eye morphogenesis
GO:0050882 P voluntary musculoskeletal movement
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051726 P regulation of cell cycle
GO:0060059 P embryonic retina morphogenesis in camera-type eye
GO:0060235 P lens induction in camera-type eye
GO:0060395 P SMAD protein signal transduction
GO:0061072 P iris morphogenesis
GO:0071456 P cellular response to hypoxia
GO:0090575 C RNA polymerase II transcription regulator complex
GO:0097193 P intrinsic apoptotic signaling pathway
GO:1901796 P regulation of signal transduction by p53 class mediator
10547 O_BomoMSG19494_complete:A_BomoMSG_c26449_g1_i1
119bp
10548 O_BomoMSG19495_3prime_partial:A_BomoMSG_c26449_g1_i2
516bp
 homeodomain-interacting_protein_kinase_2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001105 F transcription coactivator activity
GO:0001654 P eye development
GO:0001934 P positive regulation of protein phosphorylation
GO:0003714 F transcription corepressor activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0006978 P DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007224 P smoothened signaling pathway
GO:0007628 P adult walking behavior
GO:0008284 P positive regulation of cell population proliferation
GO:0008344 P adult locomotory behavior
GO:0009952 P anterior/posterior pattern specification
GO:0010842 P retina layer formation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016604 C nuclear body
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0018107 P peptidyl-threonine phosphorylation
GO:0019048 P modulation by virus of host process
GO:0030182 P neuron differentiation
GO:0030218 P erythrocyte differentiation
GO:0030511 P positive regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 P negative regulation of BMP signaling pathway
GO:0030578 P PML body organization
GO:0032092 P positive regulation of protein binding
GO:0042771 P intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0043388 P positive regulation of DNA binding
GO:0043524 P negative regulation of neuron apoptotic process
GO:0045766 P positive regulation of angiogenesis
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046330 P positive regulation of JNK cascade
GO:0046332 F SMAD binding
GO:0046790 F virion binding
GO:0048596 P embryonic camera-type eye morphogenesis
GO:0050882 P voluntary musculoskeletal movement
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051726 P regulation of cell cycle
GO:0060059 P embryonic retina morphogenesis in camera-type eye
GO:0060235 P lens induction in camera-type eye
GO:0060395 P SMAD protein signal transduction
GO:0061072 P iris morphogenesis
GO:0071456 P cellular response to hypoxia
GO:0090575 C RNA polymerase II transcription regulator complex
GO:0097193 P intrinsic apoptotic signaling pathway
GO:1901796 P regulation of signal transduction by p53 class mediator
10549 O_BomoMSG19496_complete:A_BomoMSG_c26449_g1_i2
119bp
10550 O_BomoMSG19497_3prime_partial:A_BomoMSG_c26449_g1_i4
248bp
 hypothetical_protein_KGM_213784_[Danaus_plexippus_plexippus]
GO:0000166 F nucleotide binding
GO:0001654 P eye development
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0007224 P smoothened signaling pathway
GO:0008284 P positive regulation of cell population proliferation
GO:0009952 P anterior/posterior pattern specification
GO:0010803 P regulation of tumor necrosis factor-mediated signaling pathway
GO:0010842 P retina layer formation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016605 C PML body
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0030182 P neuron differentiation
GO:0034333 P adherens junction assembly
GO:0042771 P intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0045766 P positive regulation of angiogenesis
GO:0048596 P embryonic camera-type eye morphogenesis
GO:0060059 P embryonic retina morphogenesis in camera-type eye
GO:0060216 P definitive hemopoiesis
GO:0060235 P lens induction in camera-type eye
GO:0061072 P iris morphogenesis
GO:0072577 P endothelial cell apoptotic process
GO:0097191 P extrinsic apoptotic signaling pathway
GO:1901796 P regulation of signal transduction by p53 class mediator
10551 O_BomoMSG19498_complete:A_BomoMSG_c26449_g1_i4
119bp
10552 O_BomoMSG19499_5prime_partial:A_BomoMSG_c26450_g1_i1
159bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101740701_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005923 C bicellular tight junction
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0030054 C cell junction
GO:0035556 P intracellular signal transduction
GO:0043234 C protein-containing complex
GO:0045177 C apical part of cell
GO:0048471 C perinuclear region of cytoplasm
GO:0070062 C extracellular exosome
GO:0070830 P bicellular tight junction assembly
10553 O_BomoMSG1949_internal:A_BomoMSG_c9541_g1_i1
232bp
 Collagen,_partial_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005618 C cell wall
GO:0016020 C membrane
10554 O_BomoMSG194_internal:A_BomoMSG_c846_g2_i1
126bp
 LOW_QUALITY_PROTEIN:_spectrin_beta_chain,_non-erythrocytic_2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005938 C cell cortex
GO:0046872 F metal ion binding
GO:0051693 P actin filament capping
10555 O_BomoMSG19500_complete:A_BomoMSG_c26450_g1_i2
396bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101740701_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005923 C bicellular tight junction
GO:0007155 P cell adhesion
GO:0008022 F protein C-terminus binding
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016324 C apical plasma membrane
GO:0016327 C apicolateral plasma membrane
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0031410 C cytoplasmic vesicle
GO:0042552 P myelination
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043220 C Schmidt-Lanterman incisure
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
10556 O_BomoMSG19501_5prime_partial:A_BomoMSG_c26450_g1_i3
345bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101740701_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005923 C bicellular tight junction
GO:0007155 P cell adhesion
GO:0008022 F protein C-terminus binding
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0016327 C apicolateral plasma membrane
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0031410 C cytoplasmic vesicle
GO:0042552 P myelination
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043220 C Schmidt-Lanterman incisure
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
10557 O_BomoMSG19502_internal:A_BomoMSG_c26451_g1_i1
181bp
 uncharacterized_protein_LOC101735977_isoform_X2_[Bombyx_mori]
10558 O_BomoMSG19503_5prime_partial:A_BomoMSG_c26451_g1_i1
151bp
10559 O_BomoMSG19504_5prime_partial:A_BomoMSG_c26451_g1_i2
771bp
 uncharacterized_protein_LOC101735977_isoform_X1_[Bombyx_mori]
GO:0000213 F tRNA-intron endonuclease activity
GO:0000214 C tRNA-intron endonuclease complex
GO:0000379 P tRNA-type intron splice site recognition and cleavage
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0008033 P tRNA processing
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
10560 O_BomoMSG19505_complete:A_BomoMSG_c26451_g1_i2
113bp
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