SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10111 O_BomoMSG19100_internal:A_BomoMSG_c26341_g1_i4
206bp
 DNA-directed_RNA_polymerase_III_subunit_RPC6_[Bombyx_mori]
GO:0001056 F RNA polymerase III activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005666 C RNA polymerase III complex
GO:0006359 P regulation of transcription by RNA polymerase III
GO:0006383 P transcription by RNA polymerase III
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
10112 O_BomoMSG19101_complete:A_BomoMSG_c26343_g1_i2
245bp
 zinc_finger_protein_502_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
10113 O_BomoMSG19102_complete:A_BomoMSG_c26343_g1_i3
219bp
 zinc_finger_protein_502_isoform_X2_[Bombyx_mori]
10114 O_BomoMSG19103_complete:A_BomoMSG_c26343_g1_i4
138bp
 zinc_finger_protein_502_isoform_X2_[Bombyx_mori]
10115 O_BomoMSG19104_5prime_partial:A_BomoMSG_c26343_g1_i5
370bp
 zinc_finger_protein_502_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
10116 O_BomoMSG19105_internal:A_BomoMSG_c26344_g1_i1
235bp
 PR_domain_zinc_finger_protein_5_isoform_X1_[Bombyx_mori]
10117 O_BomoMSG19106_internal:A_BomoMSG_c26345_g1_i1
316bp
 UPF0668_protein_C10orf76_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
10118 O_BomoMSG19107_internal:A_BomoMSG_c26345_g1_i2
370bp
 UPF0668_protein_C10orf76_homolog_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
10119 O_BomoMSG19108_5prime_partial:A_BomoMSG_c26347_g1_i1
209bp
 BTB/POZ_domain-containing_protein_KCTD3_[Bombyx_mori]
GO:0051260 P protein homooligomerization
10120 O_BomoMSG19109_complete:A_BomoMSG_c26347_g2_i1
151bp
 BTB/POZ_domain-containing_protein_KCTD3_[Bombyx_mori]
GO:0051260 P protein homooligomerization
10121 O_BomoMSG1910_5prime_partial:A_BomoMSG_c9377_g1_i1
100bp
 chaperonin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0051082 F unfolded protein binding
10122 O_BomoMSG19110_5prime_partial:A_BomoMSG_c26347_g1_i2
460bp
 BTB/POZ_domain-containing_protein_KCTD3_[Bombyx_mori]
GO:0051260 P protein homooligomerization
10123 O_BomoMSG19111_complete:A_BomoMSG_c26347_g1_i2
142bp
10124 O_BomoMSG19112_5prime_partial:A_BomoMSG_c26348_g1_i1
213bp
 unconventional_myosin-Va_[Bombyx_mori]
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0003091 P renal water homeostasis
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0016459 C myosin complex
GO:0017137 F small GTPase binding
GO:0030659 C cytoplasmic vesicle membrane
GO:0032439 P endosomal transport
GO:0043234 C protein-containing complex
GO:0045179 C apical cortex
GO:0055037 C recycling endosome
GO:0070062 C extracellular exosome
10125 O_BomoMSG19113_complete:A_BomoMSG_c26348_g1_i1
156bp
10126 O_BomoMSG19114_complete:A_BomoMSG_c26348_g1_i1
111bp
10127 O_BomoMSG19115_internal:A_BomoMSG_c26349_g1_i1
129bp
 G_patch_domain-containing_protein_1_homolog_[Bombyx_mori]
10128 O_BomoMSG19116_5prime_partial:A_BomoMSG_c26349_g1_i1
101bp
10129 O_BomoMSG19117_internal:A_BomoMSG_c26349_g1_i2
386bp
 G_patch_domain-containing_protein_1_homolog_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0006397 P mRNA processing
10130 O_BomoMSG19118_5prime_partial:A_BomoMSG_c26349_g1_i2
144bp
10131 O_BomoMSG19119_5prime_partial:A_BomoMSG_c26349_g1_i2
101bp
10132 O_BomoMSG1911_internal:A_BomoMSG_c9382_g1_i1
106bp
 afadin_isoform_X1_[Bombyx_mori]
10133 O_BomoMSG19120_internal:A_BomoMSG_c26349_g1_i3
656bp
 G_patch_domain-containing_protein_1_homolog_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006397 P mRNA processing
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
10134 O_BomoMSG19121_5prime_partial:A_BomoMSG_c26349_g1_i3
101bp
10135 O_BomoMSG19122_internal:A_BomoMSG_c26349_g1_i4
517bp
 G_patch_domain-containing_protein_1_homolog_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0006397 P mRNA processing
10136 O_BomoMSG19123_5prime_partial:A_BomoMSG_c26349_g1_i4
101bp
10137 O_BomoMSG19124_internal:A_BomoMSG_c26349_g1_i5
365bp
 G_patch_domain-containing_protein_1_homolog_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0006397 P mRNA processing
10138 O_BomoMSG19125_5prime_partial:A_BomoMSG_c26349_g1_i5
122bp
10139 O_BomoMSG19126_5prime_partial:A_BomoMSG_c26349_g1_i5
101bp
10140 O_BomoMSG19127_3prime_partial:A_BomoMSG_c26349_g1_i6
422bp
 G_patch_domain-containing_protein_1_homolog_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0006397 P mRNA processing
previous next from show/29137

- SilkBase 1999-2023 -