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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9781 O_BomoASG18804_5prime_partial:A_BomoASG_c30332_g1_i1
102bp
9782 O_BomoASG18805_3prime_partial:A_BomoASG_c30332_g1_i2
135bp
 E3_ubiquitin-protein_ligase_Hakai_isoform_X1_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0007162 P negative regulation of cell adhesion
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030155 P regulation of cell adhesion
GO:0030335 P positive regulation of cell migration
GO:0045807 P positive regulation of endocytosis
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
9783 O_BomoASG18806_5prime_partial:A_BomoASG_c30332_g1_i2
102bp
9784 O_BomoASG18807_3prime_partial:A_BomoASG_c30332_g1_i3
211bp
 E3_ubiquitin-protein_ligase_Hakai_isoform_X1_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0007162 P negative regulation of cell adhesion
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030155 P regulation of cell adhesion
GO:0030335 P positive regulation of cell migration
GO:0045807 P positive regulation of endocytosis
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
9785 O_BomoASG18808_5prime_partial:A_BomoASG_c30332_g1_i3
102bp
9786 O_BomoASG18809_internal:A_BomoASG_c30332_g1_i4
121bp
 E3_ubiquitin-protein_ligase_Hakai_isoform_X2_[Bombyx_mori]
9787 O_BomoASG1880_complete:A_BomoASG_c12133_g1_i1
238bp
 uncharacterized_protein_LOC101741342_[Bombyx_mori]
9788 O_BomoASG18810_5prime_partial:A_BomoASG_c30332_g1_i4
102bp
9789 O_BomoASG18811_5prime_partial:A_BomoASG_c30333_g1_i2
100bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
9790 O_BomoASG18812_5prime_partial:A_BomoASG_c30333_g1_i3
100bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
9791 O_BomoASG18813_5prime_partial:A_BomoASG_c30333_g1_i4
100bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
9792 O_BomoASG18814_complete:A_BomoASG_c30334_g1_i1
901bp
 transportin-1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008139 F nuclear localization sequence binding
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
9793 O_BomoASG18815_complete:A_BomoASG_c30334_g1_i1
126bp
9794 O_BomoASG18816_complete:A_BomoASG_c30334_g1_i2
805bp
 transportin-1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008139 F nuclear localization sequence binding
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016032 P viral process
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0072372 C cilium
9795 O_BomoASG18817_complete:A_BomoASG_c30334_g1_i2
135bp
9796 O_BomoASG18818_complete:A_BomoASG_c30334_g1_i2
126bp
9797 O_BomoASG18819_complete:A_BomoASG_c30334_g1_i3
251bp
 transportin-1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008139 F nuclear localization sequence binding
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
9798 O_BomoASG1881_complete:A_BomoASG_c12133_g1_i1
112bp
9799 O_BomoASG18820_3prime_partial:A_BomoASG_c30335_g1_i1
331bp
 zinc_finger_protein_879_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
9800 O_BomoASG18821_complete:A_BomoASG_c30335_g1_i1
128bp
9801 O_BomoASG18822_internal:A_BomoASG_c30335_g1_i2
460bp
 zinc_finger_protein_879_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
9802 O_BomoASG18823_complete:A_BomoASG_c30335_g1_i2
128bp
9803 O_BomoASG18824_3prime_partial:A_BomoASG_c30335_g1_i4
483bp
 zinc_finger_protein_879_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
9804 O_BomoASG18825_complete:A_BomoASG_c30335_g1_i4
128bp
9805 O_BomoASG18826_complete:A_BomoASG_c30336_g1_i2
255bp
 dehydrodolichyl_diphosphate_synthase_complex_subunit_Nus1_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0004659 F prenyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016765 F transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0019408 P dolichol biosynthetic process
GO:0030154 P cell differentiation
GO:0032383 P regulation of intracellular cholesterol transport
GO:0035268 P protein mannosylation
GO:0042632 P cholesterol homeostasis
GO:0055092 P sterol homeostasis
9806 O_BomoASG18827_5prime_partial:A_BomoASG_c30338_g1_i1
179bp
 F-box/LRR-repeat_protein_20_[Bombyx_mori]
GO:0001662 P behavioral fear response
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
9807 O_BomoASG18828_3prime_partial:A_BomoASG_c30338_g1_i1
126bp
9808 O_BomoASG18829_5prime_partial:A_BomoASG_c30339_g1_i2
330bp
 cohesin_subunit_SA-2_isoform_X1_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000785 C chromatin
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005886 C plasma membrane
GO:0006366 P transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0019827 P stem cell population maintenance
GO:0032876 P negative regulation of DNA endoreduplication
GO:0045111 C intermediate filament cytoskeleton
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
9809 O_BomoASG1882_complete:A_BomoASG_c12133_g1_i2
238bp
 uncharacterized_protein_LOC101741342_[Bombyx_mori]
9810 O_BomoASG18830_3prime_partial:A_BomoASG_c30339_g1_i2
327bp
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