Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
9181	O_BomoASG18264_complete:A_BomoASG_c30156_g1_i6 214bp	Bomo_Chr25
9182	O_BomoASG18265_5prime_partial:A_BomoASG_c30156_g1_i7 371bp	Bomo_Chr25	pre-mRNA-processing_factor_39_[Bombyx_mori]	GO:0000243 C commitment complex GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000395 P mRNA 5'-splice site recognition GO:0000398 P mRNA splicing, via spliceosome GO:0005634 C nucleus GO:0005685 C U1 snRNP GO:0006396 P RNA processing GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0030627 F pre-mRNA 5'-splice site binding GO:0071004 C U2-type prespliceosome
9183	O_BomoASG18266_complete:A_BomoASG_c30156_g1_i7 214bp	Bomo_Chr25
9184	O_BomoASG18267_complete:A_BomoASG_c30156_g1_i8 928bp	Bomo_Chr25	pre-mRNA-processing_factor_39_[Bombyx_mori]	GO:0000243 C commitment complex GO:0000395 P mRNA 5'-splice site recognition GO:0005634 C nucleus GO:0005685 C U1 snRNP GO:0006396 P RNA processing GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0030627 F pre-mRNA 5'-splice site binding GO:0071004 C U2-type prespliceosome
9185	O_BomoASG18268_complete:A_BomoASG_c30156_g1_i8 214bp	Bomo_Chr25
9186	O_BomoASG18269_complete:A_BomoASG_c30156_g1_i8 115bp	Bomo_Chr25
9187	O_BomoASG1826_internal:A_BomoASG_c11815_g1_i1 108bp	Bomo_Chr10	hemocytin_[Bombyx_mori]	GO:0007155 P cell adhesion GO:0030246 F carbohydrate binding
9188	O_BomoASG18270_complete:A_BomoASG_c30156_g1_i8 101bp	Bomo_Chr25
9189	O_BomoASG18271_complete:A_BomoASG_c30156_g1_i8 101bp	Bomo_Chr25
9190	O_BomoASG18272_complete:A_BomoASG_c30157_g1_i1 300bp	Bomo_Chr3	LOW_QUALITY_PROTEIN:_transcription_initiation_factor_TFIID_subunit_11_[Bombyx_mori]	GO:0001075 F RNA polymerase II general transcription initiation factor activity GO:0003713 F transcription coactivator activity GO:0005634 C nucleus GO:0005669 C transcription factor TFIID complex GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006367 P transcription initiation from RNA polymerase II promoter GO:0008134 F transcription factor binding GO:0046982 F protein heterodimerization activity GO:0051123 P RNA polymerase II preinitiation complex assembly
9191	O_BomoASG18273_complete:A_BomoASG_c30157_g1_i2 300bp	Bomo_Chr3	LOW_QUALITY_PROTEIN:_transcription_initiation_factor_TFIID_subunit_11_[Bombyx_mori]	GO:0001075 F RNA polymerase II general transcription initiation factor activity GO:0003713 F transcription coactivator activity GO:0005634 C nucleus GO:0005669 C transcription factor TFIID complex GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006367 P transcription initiation from RNA polymerase II promoter GO:0008134 F transcription factor binding GO:0046982 F protein heterodimerization activity GO:0051123 P RNA polymerase II preinitiation complex assembly
9192	O_BomoASG18274_complete:A_BomoASG_c30158_g1_i1 143bp	Bomo_Chr11	extramacrochaetae_protein_[Bombyx_mori]	GO:0000122 P negative regulation of transcription by RNA polymerase II GO:0001191 F obsolete transcriptional repressor activity, RNA polymerase II transcription factor binding GO:0001964 P startle response GO:0002121 P inter-male aggressive behavior GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0007286 P spermatid development GO:0007391 P dorsal closure GO:0007422 P peripheral nervous system development GO:0007458 P progression of morphogenetic furrow involved in compound eye morphogenesis GO:0007460 P R8 cell fate commitment GO:0007476 P imaginal disc-derived wing morphogenesis GO:0007494 P midgut development GO:0007530 P sex determination GO:0007541 P sex determination, primary response to X:A ratio GO:0008258 P head involution GO:0008283 P cell population proliferation GO:0008407 P chaeta morphogenesis GO:0008586 P imaginal disc-derived wing vein morphogenesis GO:0030381 P chorion-containing eggshell pattern formation GO:0031987 P locomotion involved in locomotory behavior GO:0042675 P compound eye cone cell differentiation GO:0043392 P negative regulation of DNA binding GO:0045466 P R7 cell differentiation GO:0045892 P negative regulation of transcription, DNA-templated GO:0046331 P lateral inhibition GO:0046552 P photoreceptor cell fate commitment GO:0046843 P dorsal appendage formation GO:0046982 F protein heterodimerization activity GO:0046983 F protein dimerization activity GO:0048056 P R3/R4 cell differentiation GO:0048854 P brain morphogenesis
9193	O_BomoASG18275_internal:A_BomoASG_c30162_g1_i1 166bp	Bomo_Chr27	reverse_transcriptase_-_silkworm_transposon_Pao
9194	O_BomoASG18276_3prime_partial:A_BomoASG_c30163_g1_i1 329bp	Bomo_Chr16	phosphorylase_b_kinase_gamma_catalytic_chain,_skeletal_muscle/heart_isoform_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0004689 F phosphorylase kinase activity GO:0005516 F calmodulin binding GO:0005524 F ATP binding GO:0005964 C phosphorylase kinase complex GO:0005975 P carbohydrate metabolic process GO:0005977 P glycogen metabolic process GO:0005978 P glycogen biosynthetic process GO:0006468 P protein phosphorylation GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0019899 F enzyme binding
9195	O_BomoASG18277_3prime_partial:A_BomoASG_c30163_g1_i2 301bp	Bomo_Chr16	phosphorylase_b_kinase_gamma_catalytic_chain,_skeletal_muscle/heart_isoform_isoform_X2_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0004689 F phosphorylase kinase activity GO:0005516 F calmodulin binding GO:0005524 F ATP binding GO:0005964 C phosphorylase kinase complex GO:0005975 P carbohydrate metabolic process GO:0005977 P glycogen metabolic process GO:0005978 P glycogen biosynthetic process GO:0006468 P protein phosphorylation GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0019899 F enzyme binding
9196	O_BomoASG18278_5prime_partial:A_BomoASG_c30164_g1_i1 147bp	Bomo_Chr7	gamma-taxilin_[Bombyx_mori]
9197	O_BomoASG18279_5prime_partial:A_BomoASG_c30164_g1_i2 196bp	Bomo_Chr7	gamma-taxilin_[Bombyx_mori]
9198	O_BomoASG1827_complete:A_BomoASG_c11831_g1_i1 508bp	Bomo_Chr24	coatomer_protein_complex_subunit_delta_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005737 C cytoplasm GO:0005783 C endoplasmic reticulum GO:0005794 C Golgi apparatus GO:0006810 P transport GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum GO:0008344 P adult locomotory behavior GO:0015031 P protein transport GO:0016020 C membrane GO:0016192 P vesicle-mediated transport GO:0021691 P cerebellar Purkinje cell layer maturation GO:0030126 C COPI vesicle coat GO:0030137 C COPI-coated vesicle GO:0030663 C COPI-coated vesicle membrane GO:0031410 C cytoplasmic vesicle GO:0043231 C intracellular membrane-bounded organelle GO:0043473 P pigmentation GO:0044822 F RNA binding GO:0048193 P Golgi vesicle transport
9199	O_BomoASG18280_complete:A_BomoASG_c30165_g1_i2 115bp	Bomo_Chr26
9200	O_BomoASG18281_complete:A_BomoASG_c30167_g1_i1 318bp	Bomo_Chr10	E3_ubiquitin-protein_ligase_RNF34_isoform_X2_[Bombyx_mori]	GO:0002039 F p53 binding GO:0004842 F ubiquitin-protein transferase activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0005886 C plasma membrane GO:0006915 P apoptotic process GO:0008270 F zinc ion binding GO:0012505 C endomembrane system GO:0016020 C membrane GO:0016567 P protein ubiquitination GO:0016607 C nuclear speck GO:0016874 F ligase activity GO:0031625 F ubiquitin protein ligase binding GO:0035872 P nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway GO:0042787 P ubiquitin-dependent protein catabolic process GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process GO:0046872 F metal ion binding GO:0061630 F ubiquitin protein ligase activity GO:0070417 P cellular response to cold GO:0070936 P protein K48-linked ubiquitination GO:1901797 P negative regulation of signal transduction by p53 class mediator GO:1901981 F phosphatidylinositol phosphate binding GO:1902042 P negative regulation of extrinsic apoptotic signaling pathway via death domain receptors GO:2000374 P regulation of oxygen metabolic process GO:2001271 P negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis
9201	O_BomoASG18282_complete:A_BomoASG_c30167_g1_i1 167bp	Bomo_Chr10
9202	O_BomoASG18283_complete:A_BomoASG_c30167_g1_i2 167bp	Bomo_Chr10
9203	O_BomoASG18284_complete:A_BomoASG_c30167_g1_i3 337bp	Bomo_Chr10	E3_ubiquitin-protein_ligase_RNF34_isoform_X1_[Bombyx_mori]	GO:0002039 F p53 binding GO:0004842 F ubiquitin-protein transferase activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0005886 C plasma membrane GO:0006915 P apoptotic process GO:0008270 F zinc ion binding GO:0012505 C endomembrane system GO:0016020 C membrane GO:0016567 P protein ubiquitination GO:0016607 C nuclear speck GO:0016874 F ligase activity GO:0031625 F ubiquitin protein ligase binding GO:0035872 P nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway GO:0042787 P ubiquitin-dependent protein catabolic process GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process GO:0046872 F metal ion binding GO:0061630 F ubiquitin protein ligase activity GO:0070417 P cellular response to cold GO:0070936 P protein K48-linked ubiquitination GO:1901797 P negative regulation of signal transduction by p53 class mediator GO:1901981 F phosphatidylinositol phosphate binding GO:1902042 P negative regulation of extrinsic apoptotic signaling pathway via death domain receptors GO:2000374 P regulation of oxygen metabolic process GO:2001271 P negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis
9204	O_BomoASG18285_complete:A_BomoASG_c30167_g1_i3 186bp	Bomo_Chr10
9205	O_BomoASG18286_complete:A_BomoASG_c30169_g1_i1 330bp	Bomo_Chr1	LOW_QUALITY_PROTEIN:_peroxisomal_membrane_protein_PEX16_[Bombyx_mori]	GO:0005777 C peroxisome GO:0005778 C peroxisomal membrane GO:0007031 P peroxisome organization GO:0016020 C membrane GO:0016021 C integral component of membrane
9206	O_BomoASG18287_complete:A_BomoASG_c30169_g1_i1 110bp	Bomo_Chr1
9207	O_BomoASG18288_complete:A_BomoASG_c30169_g1_i2 185bp	Bomo_Chr1	LOW_QUALITY_PROTEIN:_peroxisomal_membrane_protein_PEX16_[Bombyx_mori]	GO:0005777 C peroxisome GO:0005778 C peroxisomal membrane GO:0007031 P peroxisome organization GO:0016020 C membrane GO:0016021 C integral component of membrane
9208	O_BomoASG18289_5prime_partial:A_BomoASG_c30170_g1_i1 190bp	Bomo_Chr6	Glucosidase_2_subunit_beta_[Papilio_xuthus]	GO:0003674 F molecular_function GO:0005783 C endoplasmic reticulum GO:0006487 P protein N-linked glycosylation GO:0006491 P N-glycan processing GO:0017177 C glucosidase II complex
9209	O_BomoASG1828_complete:A_BomoASG_c11836_g1_i1 106bp	Bomo_Chr11	glycerol-3-phosphate_phosphatase_[Bombyx_mori]	GO:0000121 F glycerol-1-phosphatase activity GO:0000287 F magnesium ion binding GO:0004721 F phosphoprotein phosphatase activity GO:0004725 F protein tyrosine phosphatase activity GO:0005829 C cytosol GO:0005975 P carbohydrate metabolic process GO:0006114 P glycerol biosynthetic process GO:0006650 P glycerophospholipid metabolic process GO:0008152 P metabolic process GO:0016311 P dephosphorylation GO:0016787 F hydrolase activity GO:0016791 F phosphatase activity GO:0035335 P peptidyl-tyrosine dephosphorylation GO:0043136 F glycerol-3-phosphatase activity GO:0045721 P negative regulation of gluconeogenesis GO:0046872 F metal ion binding GO:0098519 F nucleotide phosphatase activity, acting on free nucleotides
9210	O_BomoASG18290_internal:A_BomoASG_c30171_g1_i1 139bp	Bomo_Chr12	WASH_complex_subunit_4_isoform_X1_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005654 C nucleoplasm GO:0005768 C endosome GO:0005769 C early endosome GO:0006810 P transport GO:0007032 P endosome organization GO:0015031 P protein transport GO:0016197 P endosomal transport GO:0031083 C BLOC-1 complex GO:0071203 C WASH complex