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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8161 O_BomoASG17346_3prime_partial:A_BomoASG_c29818_g1_i1
333bp
 Pol_protein_[Bombyx_mori]
8162 O_BomoASG17347_5prime_partial:A_BomoASG_c29818_g1_i1
213bp
8163 O_BomoASG17348_5prime_partial:A_BomoASG_c29818_g1_i1
183bp
8164 O_BomoASG17349_5prime_partial:A_BomoASG_c29818_g1_i1
173bp
8165 O_BomoASG1734_complete:A_BomoASG_c11119_g1_i1
170bp
 lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_[Bombyx_mori]
GO:0001817 P regulation of cytokine production
GO:0004871 F obsolete signal transducer activity
GO:0005576 C extracellular region
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0007568 P aging
GO:0016020 C membrane
GO:0032496 P response to lipopolysaccharide
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 C intracellular membrane-bounded organelle
GO:0050699 F WW domain binding
GO:0071222 P cellular response to lipopolysaccharide
8166 O_BomoASG17350_complete:A_BomoASG_c29818_g1_i1
143bp
8167 O_BomoASG17351_complete:A_BomoASG_c29818_g1_i1
122bp
8168 O_BomoASG17352_complete:A_BomoASG_c29818_g1_i1
105bp
8169 O_BomoASG17353_internal:A_BomoASG_c29820_g1_i1
890bp
 CCR4-NOT_transcription_complex_subunit_1_isoform_X4_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005778 C peroxisomal membrane
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007275 P multicellular organism development
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0019904 F protein domain specific binding
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0035195 P gene silencing by miRNA
GO:0042974 F retinoic acid receptor binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070016 F armadillo repeat domain binding
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000036 P regulation of stem cell population maintenance
8170 O_BomoASG17354_internal:A_BomoASG_c29820_g1_i2
915bp
 CCR4-NOT_transcription_complex_subunit_1_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
8171 O_BomoASG17355_3prime_partial:A_BomoASG_c29820_g1_i3
1062bp
 CCR4-NOT_transcription_complex_subunit_1_isoform_X4_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
8172 O_BomoASG17356_complete:A_BomoASG_c29822_g1_i1
102bp
8173 O_BomoASG17357_internal:A_BomoASG_c29822_g1_i3
290bp
 reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8174 O_BomoASG17358_3prime_partial:A_BomoASG_c29822_g1_i3
149bp
8175 O_BomoASG17359_complete:A_BomoASG_c29823_g1_i1
175bp
 Erg28-domain_containing_protein_[Bombyx_mori]
8176 O_BomoASG1735_internal:A_BomoASG_c11133_g1_i1
121bp
 uncharacterized_protein_LOC110386244_[Bombyx_mori]
8177 O_BomoASG17360_5prime_partial:A_BomoASG_c29824_g1_i2
174bp
 nuclear_autoantigenic_sperm_protein_[Bombyx_mori]
GO:0000790 C chromatin
GO:0001824 P blastocyst development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006334 P nucleosome assembly
GO:0006335 P DNA replication-dependent chromatin assembly
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0008283 P cell population proliferation
GO:0008584 P male gonad development
GO:0015031 P protein transport
GO:0032403 F protein-containing complex binding
GO:0033574 P response to testosterone
GO:0043234 C protein-containing complex
GO:0043486 P histone exchange
GO:0051879 F Hsp90 protein binding
8178 O_BomoASG17361_5prime_partial:A_BomoASG_c29824_g1_i3
203bp
 nuclear_autoantigenic_sperm_protein_[Bombyx_mori]
GO:0000790 C chromatin
GO:0001824 P blastocyst development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006334 P nucleosome assembly
GO:0006335 P DNA replication-dependent chromatin assembly
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0008283 P cell population proliferation
GO:0008584 P male gonad development
GO:0015031 P protein transport
GO:0032403 F protein-containing complex binding
GO:0033574 P response to testosterone
GO:0043234 C protein-containing complex
GO:0043486 P histone exchange
GO:0051879 F Hsp90 protein binding
8179 O_BomoASG17362_complete:A_BomoASG_c29826_g1_i1
340bp
 heparin_sulfate_O-sulfotransferase_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004394 F heparan sulfate 2-O-sulfotransferase activity
GO:0005794 C Golgi apparatus
GO:0007165 P signal transduction
GO:0007424 P open tracheal system development
GO:0008146 F sulfotransferase activity
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
8180 O_BomoASG17363_3prime_partial:A_BomoASG_c29827_g1_i1
237bp
 PREDICTED:_uncharacterized_protein_LOC106135613,_partial_[Amyelois_transitella]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035871 P protein K11-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0044313 P protein K6-linked deubiquitination
GO:1901562 P response to paraquat
8181 O_BomoASG17364_5prime_partial:A_BomoASG_c29827_g1_i1
142bp
8182 O_BomoASG17365_complete:A_BomoASG_c29828_g1_i1
303bp
 golgin_subfamily_A_member_5_isoform_X1_[Bombyx_mori]
GO:0000137 C Golgi cis cisterna
GO:0000138 C Golgi trans cisterna
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0005794 C Golgi apparatus
GO:0005797 C Golgi medial cisterna
GO:0005801 C cis-Golgi network
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017137 F small GTPase binding
GO:0030133 C transport vesicle
GO:0030663 C COPI-coated vesicle membrane
GO:0030674 F protein-macromolecule adaptor activity
GO:0031985 C Golgi cisterna
GO:0042803 F protein homodimerization activity
GO:0048193 P Golgi vesicle transport
8183 O_BomoASG17366_3prime_partial:A_BomoASG_c29828_g1_i2
570bp
 golgin_subfamily_A_member_5_isoform_X1_[Bombyx_mori]
GO:0000137 C Golgi cis cisterna
GO:0000138 C Golgi trans cisterna
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0005794 C Golgi apparatus
GO:0005797 C Golgi medial cisterna
GO:0005801 C cis-Golgi network
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017137 F small GTPase binding
GO:0030133 C transport vesicle
GO:0030663 C COPI-coated vesicle membrane
GO:0030674 F protein-macromolecule adaptor activity
GO:0031985 C Golgi cisterna
GO:0042803 F protein homodimerization activity
GO:0048193 P Golgi vesicle transport
8184 O_BomoASG17367_complete:A_BomoASG_c29829_g1_i1
126bp
8185 O_BomoASG17368_internal:A_BomoASG_c29829_g1_i2
292bp
 Ca(2+)/calmodulin-responsive_adenylate_cyclase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001661 P conditioned taste aversion
GO:0004016 F adenylate cyclase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006171 P cAMP biosynthetic process
GO:0006979 P response to oxidative stress
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007189 P adenylate cyclase-activating G protein-coupled receptor signaling pathway
GO:0007193 P adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
GO:0007268 P chemical synaptic transmission
GO:0007274 P neuromuscular synaptic transmission
GO:0007528 P neuromuscular junction development
GO:0007591 P molting cycle, chitin-based cuticle
GO:0007611 P learning or memory
GO:0007612 P learning
GO:0007613 P memory
GO:0007614 P short-term memory
GO:0007617 P mating behavior
GO:0007619 P courtship behavior
GO:0007625 P grooming behavior
GO:0008294 F calcium- and calmodulin-responsive adenylate cyclase activity
GO:0008306 P associative learning
GO:0008340 P determination of adult lifespan
GO:0008355 P olfactory learning
GO:0009190 P cyclic nucleotide biosynthetic process
GO:0009408 P response to heat
GO:0010738 P regulation of protein kinase A signaling
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016849 F phosphorus-oxygen lyase activity
GO:0019933 P cAMP-mediated signaling
GO:0030431 P sleep
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
GO:0048149 P behavioral response to ethanol
GO:0048675 P axon extension
GO:0090328 P regulation of olfactory learning
8186 O_BomoASG17369_3prime_partial:A_BomoASG_c29829_g1_i3
324bp
 Ca(2+)/calmodulin-responsive_adenylate_cyclase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001661 P conditioned taste aversion
GO:0004016 F adenylate cyclase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006171 P cAMP biosynthetic process
GO:0006979 P response to oxidative stress
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007189 P adenylate cyclase-activating G protein-coupled receptor signaling pathway
GO:0007193 P adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
GO:0007268 P chemical synaptic transmission
GO:0007274 P neuromuscular synaptic transmission
GO:0007528 P neuromuscular junction development
GO:0007591 P molting cycle, chitin-based cuticle
GO:0007611 P learning or memory
GO:0007612 P learning
GO:0007613 P memory
GO:0007614 P short-term memory
GO:0007617 P mating behavior
GO:0007619 P courtship behavior
GO:0007625 P grooming behavior
GO:0008294 F calcium- and calmodulin-responsive adenylate cyclase activity
GO:0008306 P associative learning
GO:0008340 P determination of adult lifespan
GO:0008355 P olfactory learning
GO:0009190 P cyclic nucleotide biosynthetic process
GO:0009408 P response to heat
GO:0010738 P regulation of protein kinase A signaling
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016849 F phosphorus-oxygen lyase activity
GO:0019933 P cAMP-mediated signaling
GO:0030431 P sleep
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
GO:0048149 P behavioral response to ethanol
GO:0048675 P axon extension
GO:0090328 P regulation of olfactory learning
8187 O_BomoASG1736_internal:A_BomoASG_c11139_g1_i1
133bp
 uncharacterized_protein_LOC110385684_[Bombyx_mori]
8188 O_BomoASG17370_complete:A_BomoASG_c29829_g1_i3
126bp
8189 O_BomoASG17371_internal:A_BomoASG_c29829_g1_i4
520bp
 LOW_QUALITY_PROTEIN:_Ca(2+)/calmodulin-responsive_adenylate_cyclase-like_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0001661 P conditioned taste aversion
GO:0004016 F adenylate cyclase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006171 P cAMP biosynthetic process
GO:0006979 P response to oxidative stress
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007189 P adenylate cyclase-activating G protein-coupled receptor signaling pathway
GO:0007193 P adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
GO:0007268 P chemical synaptic transmission
GO:0007274 P neuromuscular synaptic transmission
GO:0007528 P neuromuscular junction development
GO:0007591 P molting cycle, chitin-based cuticle
GO:0007611 P learning or memory
GO:0007612 P learning
GO:0007613 P memory
GO:0007614 P short-term memory
GO:0007617 P mating behavior
GO:0007619 P courtship behavior
GO:0007625 P grooming behavior
GO:0008294 F calcium- and calmodulin-responsive adenylate cyclase activity
GO:0008306 P associative learning
GO:0008340 P determination of adult lifespan
GO:0008355 P olfactory learning
GO:0009190 P cyclic nucleotide biosynthetic process
GO:0009408 P response to heat
GO:0010738 P regulation of protein kinase A signaling
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016849 F phosphorus-oxygen lyase activity
GO:0019933 P cAMP-mediated signaling
GO:0030431 P sleep
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
GO:0048149 P behavioral response to ethanol
GO:0048675 P axon extension
GO:0090328 P regulation of olfactory learning
8190 O_BomoASG17372_complete:A_BomoASG_c29829_g1_i4
126bp
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