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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8071 O_BomoASG17265_complete:A_BomoASG_c29781_g1_i3
144bp
8072 O_BomoASG17266_3prime_partial:A_BomoASG_c29781_g1_i4
716bp
 putative_transcription_factor_capicua_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0048286 P lung alveolus development
8073 O_BomoASG17267_complete:A_BomoASG_c29781_g1_i4
158bp
8074 O_BomoASG17268_complete:A_BomoASG_c29781_g1_i4
144bp
8075 O_BomoASG17269_complete:A_BomoASG_c29782_g1_i1
103bp
 uncharacterized_protein_LOC105691027_[Athalia_rosae]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8076 O_BomoASG1726_internal:A_BomoASG_c11023_g1_i2
105bp
 hypothetical_protein_RR48_14368,_partial_[Papilio_machaon]
8077 O_BomoASG17270_complete:A_BomoASG_c29782_g1_i2
142bp
 uncharacterized_protein_LOC105691027_[Athalia_rosae]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8078 O_BomoASG17271_3prime_partial:A_BomoASG_c29782_g1_i4
130bp
 blastopia_polyprotein_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8079 O_BomoASG17272_5prime_partial:A_BomoASG_c29783_g1_i1
143bp
8080 O_BomoASG17273_3prime_partial:A_BomoASG_c29783_g1_i1
135bp
 PREDICTED:_HEAT_repeat-containing_protein_5B-like_[Papilio_polytes]
GO:0016020 C membrane
GO:0070062 C extracellular exosome
8081 O_BomoASG17274_3prime_partial:A_BomoASG_c29783_g2_i1
312bp
 HEAT_repeat-containing_protein_5B_[Bombyx_mori]
GO:0005515 F protein binding
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0070062 C extracellular exosome
8082 O_BomoASG17275_complete:A_BomoASG_c29783_g2_i1
108bp
8083 O_BomoASG17276_complete:A_BomoASG_c29785_g1_i1
134bp
 B-cell_CLL/lymphoma_7_protein_family_member_A_[Bombyx_mori]
GO:0006915 P apoptotic process
GO:0016055 P Wnt signaling pathway
GO:0030154 P cell differentiation
8084 O_BomoASG17277_internal:A_BomoASG_c29786_g1_i1
299bp
 GRIP_and_coiled-coil_domain-containing_protein_2_[Bombyx_mori]
8085 O_BomoASG17278_internal:A_BomoASG_c29788_g2_i1
229bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
8086 O_BomoASG17279_complete:A_BomoASG_c29788_g3_i1
157bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
8087 O_BomoASG1727_internal:A_BomoASG_c11023_g1_i2
105bp
8088 O_BomoASG17280_complete:A_BomoASG_c29788_g3_i1
113bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8089 O_BomoASG17281_internal:A_BomoASG_c29789_g1_i1
103bp
8090 O_BomoASG17282_complete:A_BomoASG_c29790_g1_i1
300bp
 exosome_complex_component_RRP4_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0004532 F exoribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0008312 F 7S RNA binding
GO:0030307 P positive regulation of cell growth
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0043488 P regulation of mRNA stability
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071034 P CUT catabolic process
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071049 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
8091 O_BomoASG17283_complete:A_BomoASG_c29790_g1_i1
125bp
8092 O_BomoASG17284_complete:A_BomoASG_c29793_g1_i2
437bp
 nuclear_fragile_X_mental_retardation-interacting_protein_1_[Bombyx_mori]
GO:0000492 P box C/D snoRNP assembly
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005726 C perichromatin fibrils
GO:0005730 C nucleolus
GO:0008023 C transcription elongation factor complex
GO:0016363 C nuclear matrix
GO:0022626 C cytosolic ribosome
GO:0030515 F snoRNA binding
GO:0030674 F protein-macromolecule adaptor activity
GO:0042802 F identical protein binding
GO:0043234 C protein-containing complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048786 C presynaptic active zone
GO:0051117 F ATPase binding
GO:0051259 P protein complex oligomerization
GO:0070761 C pre-snoRNP complex
8093 O_BomoASG17285_complete:A_BomoASG_c29793_g1_i2
101bp
8094 O_BomoASG17286_3prime_partial:A_BomoASG_c29794_g1_i1
136bp
 epidermal_growth_factor_receptor_substrate_15-like_1_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0004602 F glutathione peroxidase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006304 P DNA modification
GO:0006749 P glutathione metabolic process
GO:0009751 P response to salicylic acid
GO:0010269 P response to selenium ion
GO:0014070 P response to organic cyclic compound
GO:0016740 F transferase activity
GO:0018900 P dichloromethane metabolic process
GO:0033197 P response to vitamin E
GO:0042493 P response to xenobiotic stimulus
GO:0047651 F alkylhalidase activity
GO:0098869 P cellular oxidant detoxification
8095 O_BomoASG17287_5prime_partial:A_BomoASG_c29794_g1_i1
116bp
8096 O_BomoASG17288_5prime_partial:A_BomoASG_c29795_g1_i1
243bp
 liprin-beta-1_isoform_X13_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
8097 O_BomoASG17289_3prime_partial:A_BomoASG_c29795_g1_i1
131bp
 hypothetical_protein_X777_14301,_partial_[Ooceraea_biroi]
8098 O_BomoASG1728_internal:A_BomoASG_c11029_g1_i1
237bp
 uncharacterized_protein_LOC110376484_[Helicoverpa_armigera]
8099 O_BomoASG17290_5prime_partial:A_BomoASG_c29795_g1_i2
230bp
 liprin-beta-1_isoform_X2_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
8100 O_BomoASG17291_3prime_partial:A_BomoASG_c29795_g1_i2
131bp
 hypothetical_protein_X777_14301,_partial_[Ooceraea_biroi]
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