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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7801 O_BomoASG17021_5prime_partial:A_BomoASG_c29686_g1_i2
551bp
 LOW_QUALITY_PROTEIN:_regulator_of_nonsense_transcripts_2_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001889 P liver development
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006406 P mRNA export from nucleus
GO:0031100 P animal organ regeneration
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0048471 C perinuclear region of cytoplasm
7802 O_BomoASG17022_complete:A_BomoASG_c29687_g1_i1
178bp
 trafficking_protein_particle_complex_subunit_3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0030008 C TRAPP complex
7803 O_BomoASG17023_complete:A_BomoASG_c29687_g1_i2
178bp
 trafficking_protein_particle_complex_subunit_3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0030008 C TRAPP complex
7804 O_BomoASG17024_3prime_partial:A_BomoASG_c29687_g3_i1
194bp
 uncharacterized_protein_LOC105841772_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
7805 O_BomoASG17025_complete:A_BomoASG_c29687_g3_i1
192bp
 craniofacial_development_protein_2-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
7806 O_BomoASG17026_internal:A_BomoASG_c29688_g1_i1
250bp
 putative_ATP-dependent_RNA_helicase_DHX33_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000182 F rDNA binding
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0033613 F DNA-binding transcription factor binding
GO:0044822 F RNA binding
GO:0045943 P positive regulation of transcription by RNA polymerase I
7807 O_BomoASG17027_complete:A_BomoASG_c29689_g2_i1
474bp
 uridine_5'-monophosphate_synthase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004588 F orotate phosphoribosyltransferase activity
GO:0004590 F orotidine-5'-phosphate decarboxylase activity
GO:0005875 C microtubule associated complex
GO:0006207 P 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006221 P pyrimidine nucleotide biosynthetic process
GO:0008152 P metabolic process
GO:0009116 P nucleoside metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0044205 P 'de novo' UMP biosynthetic process
7808 O_BomoASG17028_complete:A_BomoASG_c29689_g2_i1
111bp
7809 O_BomoASG17029_3prime_partial:A_BomoASG_c29691_g1_i1
357bp
 cell_cycle_checkpoint_control_protein_RAD9A_[Bombyx_mori]
GO:0000075 P cell cycle checkpoint signaling
GO:0000076 P DNA replication checkpoint signaling
GO:0000077 P DNA damage checkpoint signaling
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0008853 F exodeoxyribonuclease III activity
GO:0016787 F hydrolase activity
GO:0017124 F SH3 domain binding
GO:0019899 F enzyme binding
GO:0019901 F protein kinase binding
GO:0030896 C checkpoint clamp complex
GO:0031573 P mitotic intra-S DNA damage checkpoint signaling
GO:0042826 F histone deacetylase binding
GO:0071479 P cellular response to ionizing radiation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:1901796 P regulation of signal transduction by p53 class mediator
GO:1902231 P positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage
7810 O_BomoASG1702_5prime_partial:A_BomoASG_c10786_g1_i1
132bp
 PHD_finger_protein_rhinoceros_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0042051 P compound eye photoreceptor development
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0046872 F metal ion binding
7811 O_BomoASG17030_internal:A_BomoASG_c29692_g1_i1
562bp
 survivin-1_isoform_X1_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0001890 P placenta development
GO:0004842 F ubiquitin-protein transferase activity
GO:0004869 F cysteine-type endopeptidase inhibitor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006915 P apoptotic process
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008284 P positive regulation of cell population proliferation
GO:0009966 P regulation of signal transduction
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030414 F peptidase inhibitor activity
GO:0030496 C midbody
GO:0032465 P regulation of cytokinesis
GO:0042127 P regulation of cell population proliferation
GO:0043066 P negative regulation of apoptotic process
GO:0051301 P cell division
GO:0060711 P labyrinthine layer development
GO:0060712 P spongiotrophoblast layer development
GO:0061631 F ubiquitin conjugating enzyme activity
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
7812 O_BomoASG17031_5prime_partial:A_BomoASG_c29692_g1_i1
128bp
7813 O_BomoASG17032_internal:A_BomoASG_c29693_g1_i1
139bp
 WD_repeat_and_FYVE_domain-containing_protein_3_isoform_X2_[Bombyx_mori]
GO:0003831 F beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0006914 P autophagy
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016234 C inclusion body
GO:0016239 P positive regulation of macroautophagy
GO:0016605 C PML body
GO:0019898 C extrinsic component of membrane
GO:0031965 C nuclear membrane
GO:0034274 C Atg12-Atg5-Atg16 complex
GO:0035973 P aggrephagy
GO:0046872 F metal ion binding
GO:0097635 C extrinsic component of autophagosome membrane
7814 O_BomoASG17033_internal:A_BomoASG_c29693_g2_i1
330bp
 WD_repeat_and_FYVE_domain-containing_protein_3_isoform_X1_[Bombyx_mori]
GO:0003831 F beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0006914 P autophagy
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016234 C inclusion body
GO:0016239 P positive regulation of macroautophagy
GO:0016605 C PML body
GO:0019898 C extrinsic component of membrane
GO:0031965 C nuclear membrane
GO:0034274 C Atg12-Atg5-Atg16 complex
GO:0035973 P aggrephagy
GO:0046872 F metal ion binding
GO:0097635 C extrinsic component of autophagosome membrane
7815 O_BomoASG17034_3prime_partial:A_BomoASG_c29694_g1_i1
108bp
7816 O_BomoASG17035_5prime_partial:A_BomoASG_c29694_g1_i1
107bp
7817 O_BomoASG17036_3prime_partial:A_BomoASG_c29694_g1_i1
104bp
7818 O_BomoASG17037_5prime_partial:A_BomoASG_c29695_g1_i1
254bp
 polypyrimidine_tract-binding_protein_2_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0021510 P spinal cord development
GO:0021549 P cerebellum development
GO:0030426 C growth cone
GO:0033119 P negative regulation of RNA splicing
GO:0036002 F pre-mRNA binding
GO:0043025 C neuronal cell body
GO:0044822 F RNA binding
GO:2000177 P regulation of neural precursor cell proliferation
7819 O_BomoASG17038_complete:A_BomoASG_c29695_g1_i2
541bp
 polypyrimidine_tract-binding_protein_2_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0021510 P spinal cord development
GO:0021549 P cerebellum development
GO:0030426 C growth cone
GO:0033119 P negative regulation of RNA splicing
GO:0036002 F pre-mRNA binding
GO:0043025 C neuronal cell body
GO:0044822 F RNA binding
GO:2000177 P regulation of neural precursor cell proliferation
7820 O_BomoASG17039_complete:A_BomoASG_c29695_g1_i3
569bp
 PREDICTED:_polypyrimidine_tract-binding_protein_2_isoform_X5_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0021510 P spinal cord development
GO:0021549 P cerebellum development
GO:0030426 C growth cone
GO:0033119 P negative regulation of RNA splicing
GO:0036002 F pre-mRNA binding
GO:0043025 C neuronal cell body
GO:0044822 F RNA binding
GO:2000177 P regulation of neural precursor cell proliferation
7821 O_BomoASG1703_3prime_partial:A_BomoASG_c10789_g1_i1
117bp
 ras_GTPase-activating_protein_1_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0001570 P vasculogenesis
GO:0001934 P positive regulation of protein phosphorylation
GO:0001953 P negative regulation of cell-matrix adhesion
GO:0005096 F GTPase activator activity
GO:0005161 F platelet-derived growth factor receptor binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007162 P negative regulation of cell adhesion
GO:0007165 P signal transduction
GO:0008134 F transcription factor binding
GO:0009790 P embryo development
GO:0016020 C membrane
GO:0019900 F kinase binding
GO:0030036 P actin cytoskeleton organization
GO:0030539 P male genitalia development
GO:0030833 P regulation of actin filament polymerization
GO:0030971 F receptor tyrosine kinase binding
GO:0031235 C intrinsic component of the cytoplasmic side of the plasma membrane
GO:0031965 C nuclear membrane
GO:0032403 F protein-containing complex binding
GO:0032868 P response to insulin
GO:0036120 P cellular response to platelet-derived growth factor stimulus
GO:0042493 P response to xenobiotic stimulus
GO:0043087 P regulation of GTPase activity
GO:0043422 F protein kinase B binding
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043547 P positive regulation of GTPase activity
GO:0044325 F transmembrane transporter binding
GO:0044344 P cellular response to fibroblast growth factor stimulus
GO:0046326 P positive regulation of glucose import
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0048146 P positive regulation of fibroblast proliferation
GO:0050731 P positive regulation of peptidyl-tyrosine phosphorylation
GO:0071364 P cellular response to epidermal growth factor stimulus
GO:0090630 P activation of GTPase activity
GO:1990782 F protein tyrosine kinase binding
7822 O_BomoASG17040_3prime_partial:A_BomoASG_c29696_g1_i1
135bp
 angiomotin_[Bombyx_mori]
7823 O_BomoASG17041_5prime_partial:A_BomoASG_c29696_g2_i1
141bp
 angiomotin_[Bombyx_mori]
7824 O_BomoASG17042_3prime_partial:A_BomoASG_c29696_g1_i2
135bp
 angiomotin_[Bombyx_mori]
7825 O_BomoASG17043_internal:A_BomoASG_c29696_g2_i3
158bp
 angiomotin_[Bombyx_mori]
7826 O_BomoASG17044_complete:A_BomoASG_c29697_g1_i1
182bp
 PREDICTED:_protein_couch_potato_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0007268 P chemical synaptic transmission
GO:0007275 P multicellular organism development
GO:0007422 P peripheral nervous system development
GO:0022611 P dormancy process
GO:0035206 P regulation of hemocyte proliferation
GO:0042048 P olfactory behavior
7827 O_BomoASG17045_complete:A_BomoASG_c29697_g1_i1
129bp
7828 O_BomoASG17046_complete:A_BomoASG_c29697_g1_i1
123bp
7829 O_BomoASG17047_3prime_partial:A_BomoASG_c29699_g1_i1
468bp
 pecanex-like_protein_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007029 P endoplasmic reticulum organization
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0046331 P lateral inhibition
7830 O_BomoASG17048_complete:A_BomoASG_c29699_g1_i1
110bp
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