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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7711 O_BomoASG16941_complete:A_BomoASG_c29657_g1_i1
101bp
7712 O_BomoASG16942_3prime_partial:A_BomoASG_c29660_g1_i1
293bp
 kelch-like_protein_3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0015629 C actin cytoskeleton
GO:2001243 P negative regulation of intrinsic apoptotic signaling pathway
7713 O_BomoASG16943_5prime_partial:A_BomoASG_c29660_g1_i1
203bp
7714 O_BomoASG16944_complete:A_BomoASG_c29660_g1_i1
108bp
7715 O_BomoASG16945_3prime_partial:A_BomoASG_c29660_g1_i2
293bp
 kelch-like_protein_3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0015629 C actin cytoskeleton
GO:2001243 P negative regulation of intrinsic apoptotic signaling pathway
7716 O_BomoASG16946_5prime_partial:A_BomoASG_c29660_g1_i2
203bp
7717 O_BomoASG16947_complete:A_BomoASG_c29660_g1_i2
107bp
7718 O_BomoASG16948_5prime_partial:A_BomoASG_c29661_g2_i1
124bp
7719 O_BomoASG16949_complete:A_BomoASG_c29661_g2_i2
571bp
 transcriptional_repressor_CTCF_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006349 P regulation of gene expression by genomic imprinting
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0010628 P positive regulation of gene expression
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0042393 F histone binding
GO:0043046 P DNA methylation involved in gamete generation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051569 P regulation of histone H3-K4 methylation
7720 O_BomoASG1694_internal:A_BomoASG_c10696_g1_i1
154bp
 FH1/FH2_domain-containing_protein_3_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007015 P actin filament organization
GO:0030017 C sarcomere
GO:0030018 C Z disc
GO:0030837 P negative regulation of actin filament polymerization
GO:0045214 P sarcomere organization
GO:0051639 P actin filament network formation
GO:0055003 P cardiac myofibril assembly
7721 O_BomoASG16950_complete:A_BomoASG_c29661_g2_i2
145bp
7722 O_BomoASG16951_complete:A_BomoASG_c29661_g2_i3
650bp
 transcriptional_repressor_CTCF_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006349 P regulation of gene expression by genomic imprinting
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0010628 P positive regulation of gene expression
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0042393 F histone binding
GO:0043046 P DNA methylation involved in gamete generation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051569 P regulation of histone H3-K4 methylation
7723 O_BomoASG16952_complete:A_BomoASG_c29661_g2_i3
145bp
7724 O_BomoASG16953_complete:A_BomoASG_c29662_g1_i1
246bp
 heme_oxygenase_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0001666 P response to hypoxia
GO:0001935 P endothelial cell proliferation
GO:0002246 P wound healing involved in inflammatory response
GO:0002686 P negative regulation of leukocyte migration
GO:0004392 F heme oxygenase (decyclizing) activity
GO:0004630 F phospholipase D activity
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0005901 C caveola
GO:0006788 P heme oxidation
GO:0006879 P cellular iron ion homeostasis
GO:0006915 P apoptotic process
GO:0006979 P response to oxidative stress
GO:0007264 P small GTPase mediated signal transduction
GO:0007588 P excretion
GO:0008217 P regulation of blood pressure
GO:0008219 P cell death
GO:0008285 P negative regulation of cell population proliferation
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0010656 P negative regulation of muscle cell apoptotic process
GO:0014806 P smooth muscle hyperplasia
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0019899 F enzyme binding
GO:0020037 F heme binding
GO:0031670 P cellular response to nutrient
GO:0032764 P negative regulation of mast cell cytokine production
GO:0034101 P erythrocyte homeostasis
GO:0034383 P low-density lipoprotein particle clearance
GO:0034395 P regulation of transcription from RNA polymerase II promoter in response to iron
GO:0034605 P cellular response to heat
GO:0035094 P response to nicotine
GO:0035556 P intracellular signal transduction
GO:0042167 P heme catabolic process
GO:0042168 P heme metabolic process
GO:0042542 P response to hydrogen peroxide
GO:0042803 F protein homodimerization activity
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 C intracellular membrane-bounded organelle
GO:0043305 P negative regulation of mast cell degranulation
GO:0043392 P negative regulation of DNA binding
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043619 P regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0043627 P response to estrogen
GO:0045080 P positive regulation of chemokine production
GO:0045765 P regulation of angiogenesis
GO:0045766 P positive regulation of angiogenesis
GO:0045909 P vasodilation
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048661 P positive regulation of smooth muscle cell proliferation
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0051090 P regulation of DNA-binding transcription factor activity
GO:0051260 P protein homooligomerization
GO:0055072 P iron ion homeostasis
GO:0055114 P obsolete oxidation-reduction process
GO:0071243 P cellular response to arsenic-containing substance
GO:0071276 P cellular response to cadmium ion
GO:0071456 P cellular response to hypoxia
GO:1902042 P negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
7725 O_BomoASG16954_complete:A_BomoASG_c29663_g1_i1
250bp
 probable_pseudouridine-5'-phosphatase_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0009117 P nucleotide metabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0042060 P wound healing
GO:0046872 F metal ion binding
GO:1990738 F pseudouridine 5'-phosphatase activity
7726 O_BomoASG16955_complete:A_BomoASG_c29663_g1_i1
114bp
7727 O_BomoASG16956_complete:A_BomoASG_c29664_g1_i1
417bp
 diphthamide_synthesis_protein_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0017183 P peptidyl-diphthamide biosynthetic process from peptidyl-histidine
7728 O_BomoASG16957_3prime_partial:A_BomoASG_c29665_g1_i1
239bp
 uncharacterized_protein_LOC101737259_isoform_X1_[Bombyx_mori]
7729 O_BomoASG16958_5prime_partial:A_BomoASG_c29665_g1_i1
155bp
7730 O_BomoASG16959_complete:A_BomoASG_c29667_g1_i1
210bp
 ras_small_monomeric_GTPase_Rab6_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0001745 P compound eye morphogenesis
GO:0003779 F actin binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007293 P germarium-derived egg chamber formation
GO:0007411 P axon guidance
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0030054 C cell junction
GO:0031982 C vesicle
GO:0032482 P Rab protein signal transduction
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043025 C neuronal cell body
GO:0043204 C perikaryon
GO:0045202 C synapse
GO:0045451 P pole plasm oskar mRNA localization
GO:0045467 P R7 cell development
GO:0050832 P defense response to fungus
GO:0060078 P regulation of postsynaptic membrane potential
7731 O_BomoASG1695_complete:A_BomoASG_c10712_g1_i1
121bp
 uncharacterized_protein_LOC110384947,_partial_[Bombyx_mori]
7732 O_BomoASG16960_complete:A_BomoASG_c29667_g1_i1
118bp
 translation_initiation_factor_eIF-2B_subunit_epsilon_isoform_X2_[Bombyx_mori]
7733 O_BomoASG16961_complete:A_BomoASG_c29667_g1_i2
210bp
 ras_small_monomeric_GTPase_Rab6_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0001745 P compound eye morphogenesis
GO:0003779 F actin binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007293 P germarium-derived egg chamber formation
GO:0007411 P axon guidance
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0030054 C cell junction
GO:0031982 C vesicle
GO:0032482 P Rab protein signal transduction
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043025 C neuronal cell body
GO:0043204 C perikaryon
GO:0045202 C synapse
GO:0045451 P pole plasm oskar mRNA localization
GO:0045467 P R7 cell development
GO:0050832 P defense response to fungus
GO:0060078 P regulation of postsynaptic membrane potential
7734 O_BomoASG16962_complete:A_BomoASG_c29667_g1_i2
118bp
 translation_initiation_factor_eIF-2B_subunit_epsilon_isoform_X2_[Bombyx_mori]
7735 O_BomoASG16963_complete:A_BomoASG_c29667_g1_i3
210bp
 ras_small_monomeric_GTPase_Rab6_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0001745 P compound eye morphogenesis
GO:0003779 F actin binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007293 P germarium-derived egg chamber formation
GO:0007411 P axon guidance
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0030054 C cell junction
GO:0031982 C vesicle
GO:0032482 P Rab protein signal transduction
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043025 C neuronal cell body
GO:0043204 C perikaryon
GO:0045202 C synapse
GO:0045451 P pole plasm oskar mRNA localization
GO:0045467 P R7 cell development
GO:0050832 P defense response to fungus
GO:0060078 P regulation of postsynaptic membrane potential
7736 O_BomoASG16964_complete:A_BomoASG_c29667_g1_i3
118bp
 translation_initiation_factor_eIF-2B_subunit_epsilon_isoform_X2_[Bombyx_mori]
7737 O_BomoASG16965_complete:A_BomoASG_c29667_g1_i4
114bp
 RNA_polymerase_II_transcriptional_coactivator_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0045892 P negative regulation of transcription, DNA-templated
7738 O_BomoASG16966_complete:A_BomoASG_c29667_g4_i2
119bp
 translation_initiation_factor_eIF-2B_subunit_epsilon_isoform_X2_[Bombyx_mori]
7739 O_BomoASG16967_complete:A_BomoASG_c29667_g4_i3
119bp
 translation_initiation_factor_eIF-2B_subunit_epsilon_isoform_X2_[Bombyx_mori]
7740 O_BomoASG16968_5prime_partial:A_BomoASG_c29668_g1_i1
381bp
 PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN3_isoform_X7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0004672 F protein kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0031251 C PAN complex
GO:0044822 F RNA binding
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