Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
7201	O_BomoASG16482_complete:A_BomoASG_c29477_g1_i3 136bp	Bomo_Chr1
7202	O_BomoASG16483_complete:A_BomoASG_c29477_g1_i3 121bp	Bomo_Chr1
7203	O_BomoASG16484_5prime_partial:A_BomoASG_c29477_g1_i3 112bp	Bomo_Chr1		GO:0000738 P DNA catabolic process, exonucleolytic GO:0003677 F DNA binding GO:0003824 F catalytic activity GO:0003887 F DNA-directed DNA polymerase activity GO:0004518 F nuclease activity GO:0004527 F exonuclease activity GO:0006260 P DNA replication GO:0006261 P DNA-dependent DNA replication GO:0006308 P DNA catabolic process GO:0008152 P metabolic process GO:0008408 F 3'-5' exonuclease activity GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0016787 F hydrolase activity GO:0071897 P DNA biosynthetic process
7204	O_BomoASG16485_complete:A_BomoASG_c29477_g1_i3 109bp	Bomo_Chr1
7205	O_BomoASG16486_3prime_partial:A_BomoASG_c29477_g1_i4 883bp	Bomo_Chr1	protein_AF-10_isoform_X16_[Bombyx_mori]	GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0008270 F zinc ion binding GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0046872 F metal ion binding
7206	O_BomoASG16487_5prime_partial:A_BomoASG_c29477_g1_i4 112bp	Bomo_Chr1		GO:0000738 P DNA catabolic process, exonucleolytic GO:0003677 F DNA binding GO:0003824 F catalytic activity GO:0003887 F DNA-directed DNA polymerase activity GO:0004518 F nuclease activity GO:0004527 F exonuclease activity GO:0006260 P DNA replication GO:0006261 P DNA-dependent DNA replication GO:0006308 P DNA catabolic process GO:0008152 P metabolic process GO:0008408 F 3'-5' exonuclease activity GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0016787 F hydrolase activity GO:0071897 P DNA biosynthetic process
7207	O_BomoASG16488_complete:A_BomoASG_c29477_g1_i4 109bp	Bomo_Chr1
7208	O_BomoASG16489_internal:A_BomoASG_c29479_g1_i1 109bp	Bomo_Chr23
7209	O_BomoASG1648_5prime_partial:A_BomoASG_c10392_g1_i1 110bp	Bomo_Chr4
7210	O_BomoASG16490_internal:A_BomoASG_c29479_g1_i1 109bp	Bomo_Chr23
7211	O_BomoASG16491_complete:A_BomoASG_c29479_g1_i2 454bp	Bomo_Chr23	pleiotropic_regulator_1_isoform_X1_[Bombyx_mori]	GO:0000398 P mRNA splicing, via spliceosome GO:0000974 C Prp19 complex GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005662 C DNA replication factor A complex GO:0005681 C spliceosomal complex GO:0005730 C nucleolus GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0016607 C nuclear speck GO:0031965 C nuclear membrane GO:0034504 P protein localization to nucleus GO:0071011 C precatalytic spliceosome GO:0071013 C catalytic step 2 spliceosome GO:0080008 C Cul4-RING E3 ubiquitin ligase complex GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
7212	O_BomoASG16492_5prime_partial:A_BomoASG_c29479_g1_i2 267bp	Bomo_Chr23
7213	O_BomoASG16493_3prime_partial:A_BomoASG_c29479_g1_i2 142bp	Bomo_Chr23
7214	O_BomoASG16494_complete:A_BomoASG_c29479_g1_i2 109bp	Bomo_Chr23
7215	O_BomoASG16495_complete:A_BomoASG_c29480_g1_i1 234bp	Bomo_Chr10	ARF_GTPase-activating_protein_GIT2_isoform_X2_[Bombyx_mori]
7216	O_BomoASG16496_complete:A_BomoASG_c29480_g1_i2 194bp	Bomo_Chr10	ARF_GTPase-activating_protein_GIT2_isoform_X2_[Bombyx_mori]
7217	O_BomoASG16497_complete:A_BomoASG_c29480_g1_i2 138bp	Bomo_Chr10	ARF_GTPase-activating_protein_GIT2_isoform_X2_[Bombyx_mori]	GO:0005096 F GTPase activator activity GO:0005515 F protein binding GO:0005654 C nucleoplasm GO:0005925 C focal adhesion GO:0032403 F protein-containing complex binding GO:0043547 P positive regulation of GTPase activity GO:0046872 F metal ion binding GO:0048266 P behavioral response to pain
7218	O_BomoASG16498_complete:A_BomoASG_c29480_g1_i3 194bp	Bomo_Chr10	ARF_GTPase-activating_protein_GIT2_isoform_X2_[Bombyx_mori]
7219	O_BomoASG16499_complete:A_BomoASG_c29480_g1_i3 138bp	Bomo_Chr10	ARF_GTPase-activating_protein_GIT2_isoform_X2_[Bombyx_mori]	GO:0005096 F GTPase activator activity GO:0005515 F protein binding GO:0005654 C nucleoplasm GO:0005925 C focal adhesion GO:0032403 F protein-containing complex binding GO:0043547 P positive regulation of GTPase activity GO:0046872 F metal ion binding GO:0048266 P behavioral response to pain
7220	O_BomoASG1649_5prime_partial:A_BomoASG_c10398_g1_i1 107bp	Bomo_Chr7
7221	O_BomoASG164_internal:A_BomoASG_c1207_g1_i1 149bp	Bomo_Chr4	PREDICTED:_uncharacterized_protein_LOC105391048_[Plutella_xylostella]	GO:0003674 F molecular_function GO:0003676 F nucleic acid binding GO:0005575 C cellular_component GO:0008150 P biological_process GO:0015074 P DNA integration GO:0016020 C membrane GO:0016021 C integral component of membrane
7222	O_BomoASG16500_complete:A_BomoASG_c29480_g1_i5 210bp	Bomo_Chr10	ARF_GTPase-activating_protein_GIT2_isoform_X2_[Bombyx_mori]
7223	O_BomoASG16501_complete:A_BomoASG_c29480_g1_i5 138bp	Bomo_Chr10	ARF_GTPase-activating_protein_GIT2_isoform_X2_[Bombyx_mori]	GO:0005096 F GTPase activator activity GO:0005515 F protein binding GO:0005654 C nucleoplasm GO:0005925 C focal adhesion GO:0032403 F protein-containing complex binding GO:0043547 P positive regulation of GTPase activity GO:0046872 F metal ion binding GO:0048266 P behavioral response to pain
7224	O_BomoASG16502_complete:A_BomoASG_c29480_g1_i6 194bp	Bomo_Chr10	ARF_GTPase-activating_protein_GIT2_isoform_X2_[Bombyx_mori]
7225	O_BomoASG16503_complete:A_BomoASG_c29480_g1_i6 138bp	Bomo_Chr10	ARF_GTPase-activating_protein_GIT2_isoform_X2_[Bombyx_mori]	GO:0005096 F GTPase activator activity GO:0005515 F protein binding GO:0005654 C nucleoplasm GO:0005925 C focal adhesion GO:0032403 F protein-containing complex binding GO:0043547 P positive regulation of GTPase activity GO:0046872 F metal ion binding GO:0048266 P behavioral response to pain
7226	O_BomoASG16504_complete:A_BomoASG_c29480_g2_i1 323bp	Bomo_Chr10	ARF_GTPase-activating_protein_GIT2_isoform_X1_[Bombyx_mori]	GO:0005096 F GTPase activator activity GO:0005515 F protein binding GO:0005654 C nucleoplasm GO:0005925 C focal adhesion GO:0032403 F protein-containing complex binding GO:0043547 P positive regulation of GTPase activity GO:0046872 F metal ion binding GO:0048266 P behavioral response to pain
7227	O_BomoASG16505_3prime_partial:A_BomoASG_c29481_g1_i1 669bp	Bomo_Chr20	uncharacterized_protein_LOC101743023_[Bombyx_mori]
7228	O_BomoASG16506_internal:A_BomoASG_c29481_g1_i2 521bp	Bomo_Chr20	uncharacterized_protein_LOC101743023_[Bombyx_mori]
7229	O_BomoASG16507_internal:A_BomoASG_c29483_g1_i1 888bp	Bomo_Chr13	low-density_lipoprotein_receptor-related_protein_6_[Bombyx_mori]	GO:0001843 P neural tube closure GO:0001933 P negative regulation of protein phosphorylation GO:0003344 P pericardium morphogenesis GO:0005041 F low-density lipoprotein particle receptor activity GO:0005102 F signaling receptor binding GO:0005109 F frizzled binding GO:0005515 F protein binding GO:0005576 C extracellular region GO:0005769 C early endosome GO:0005783 C endoplasmic reticulum GO:0005794 C Golgi apparatus GO:0005829 C cytosol GO:0005886 C plasma membrane GO:0005901 C caveola GO:0006355 P regulation of transcription, DNA-templated GO:0006469 P negative regulation of protein kinase activity GO:0006897 P endocytosis GO:0007204 P positive regulation of cytosolic calcium ion concentration GO:0007268 P chemical synaptic transmission GO:0007275 P multicellular organism development GO:0009880 P embryonic pattern specification GO:0009986 C cell surface GO:0014029 P neural crest formation GO:0014033 P neural crest cell differentiation GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016055 P Wnt signaling pathway GO:0016337 P cell-cell adhesion GO:0017147 F Wnt-protein binding GO:0019210 F kinase inhibitor activity GO:0019534 F toxin transmembrane transporter activity GO:0021587 P cerebellum morphogenesis GO:0021794 P thalamus development GO:0021987 P cerebral cortex development GO:0030917 P midbrain-hindbrain boundary development GO:0031410 C cytoplasmic vesicle GO:0031901 C early endosome membrane GO:0034185 F apolipoprotein binding GO:0034392 P negative regulation of smooth muscle cell apoptotic process GO:0035261 P external genitalia morphogenesis GO:0042475 P odontogenesis of dentin-containing tooth GO:0042802 F identical protein binding GO:0042803 F protein homodimerization activity GO:0042813 F Wnt-activated receptor activity GO:0043025 C neuronal cell body GO:0043235 C receptor complex GO:0043434 P response to peptide hormone GO:0044332 P Wnt signaling pathway involved in dorsal/ventral axis specification GO:0044335 P canonical Wnt signaling pathway involved in neural crest cell differentiation GO:0044340 P canonical Wnt signaling pathway involved in regulation of cell proliferation GO:0045202 C synapse GO:0045787 P positive regulation of cell cycle GO:0045893 P positive regulation of transcription, DNA-templated GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0051091 P positive regulation of DNA-binding transcription factor activity GO:0060021 P roof of mouth development GO:0060026 P convergent extension GO:0060059 P embryonic retina morphogenesis in camera-type eye GO:0060070 P canonical Wnt signaling pathway GO:0060325 P face morphogenesis GO:0060535 P trachea cartilage morphogenesis GO:0071397 P cellular response to cholesterol GO:0071542 P dopaminergic neuron differentiation GO:0071901 P negative regulation of protein serine/threonine kinase activity GO:0071936 F coreceptor activity involved in Wnt signaling pathway GO:0072659 P protein localization to plasma membrane GO:0090009 P primitive streak formation GO:0090090 P negative regulation of canonical Wnt signaling pathway GO:0090118 P receptor-mediated endocytosis involved in cholesterol transport GO:0090244 P Wnt signaling pathway involved in somitogenesis GO:0090245 P axis elongation involved in somitogenesis GO:0090263 P positive regulation of canonical Wnt signaling pathway GO:1901998 P toxin transport GO:1904886 P beta-catenin destruction complex disassembly GO:1904928 F coreceptor activity involved in canonical Wnt signaling pathway GO:1904948 P midbrain dopaminergic neuron differentiation GO:1904953 P Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation GO:1990851 C Wnt-Frizzled-LRP5/6 complex GO:1990909 C Wnt signalosome GO:2000055 P positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification
7230	O_BomoASG16508_complete:A_BomoASG_c29483_g1_i1 201bp	Bomo_Chr13