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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6811 O_BomoASG16130_internal:A_BomoASG_c29344_g1_i2
209bp
 PREDICTED:_uncharacterized_protein_LOC105206587,_partial_[Solenopsis_invicta]
6812 O_BomoASG16131_internal:A_BomoASG_c29344_g2_i2
219bp
 PREDICTED:_uncharacterized_protein_LOC106123780_[Papilio_xuthus]
6813 O_BomoASG16132_5prime_partial:A_BomoASG_c29345_g1_i1
271bp
 uncharacterized_protein_LOC101737831_[Bombyx_mori]
6814 O_BomoASG16133_5prime_partial:A_BomoASG_c29345_g1_i1
181bp
6815 O_BomoASG16134_5prime_partial:A_BomoASG_c29345_g1_i1
173bp
6816 O_BomoASG16135_complete:A_BomoASG_c29345_g1_i1
132bp
6817 O_BomoASG16136_internal:A_BomoASG_c29345_g1_i2
191bp
 uncharacterized_protein_LOC101737831_[Bombyx_mori]
6818 O_BomoASG16137_complete:A_BomoASG_c29345_g1_i2
162bp
6819 O_BomoASG16138_internal:A_BomoASG_c29345_g1_i3
267bp
 uncharacterized_protein_LOC101737831_[Bombyx_mori]
6820 O_BomoASG16139_5prime_partial:A_BomoASG_c29345_g1_i3
235bp
6821 O_BomoASG1613_internal:A_BomoASG_c10003_g1_i1
167bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC2_[Amyelois_transitella]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
6822 O_BomoASG16140_5prime_partial:A_BomoASG_c29345_g1_i3
181bp
6823 O_BomoASG16141_internal:A_BomoASG_c29345_g1_i4
286bp
 uncharacterized_protein_LOC101737831_[Bombyx_mori]
6824 O_BomoASG16142_5prime_partial:A_BomoASG_c29345_g1_i4
181bp
6825 O_BomoASG16143_complete:A_BomoASG_c29345_g1_i4
163bp
6826 O_BomoASG16144_complete:A_BomoASG_c29345_g1_i4
132bp
6827 O_BomoASG16145_internal:A_BomoASG_c29350_g1_i1
252bp
 PIN2/TRF1-interacting_protein_isoform_X1_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005819 C spindle
GO:0007004 P telomere maintenance via telomerase
GO:0007080 P mitotic metaphase plate congression
GO:0010521 F telomerase inhibitor activity
GO:0031397 P negative regulation of protein ubiquitination
GO:0031647 P regulation of protein stability
GO:0032211 P negative regulation of telomere maintenance via telomerase
GO:0043231 C intracellular membrane-bounded organelle
GO:0051974 P negative regulation of telomerase activity
GO:0070034 F telomerase RNA binding
GO:0070198 P protein localization to chromosome, telomeric region
GO:1902570 P protein localization to nucleolus
GO:1904744 P positive regulation of telomeric DNA binding
GO:1904751 P positive regulation of protein localization to nucleolus
6828 O_BomoASG16146_3prime_partial:A_BomoASG_c29350_g1_i2
309bp
 PIN2/TRF1-interacting_protein_isoform_X1_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005819 C spindle
GO:0007004 P telomere maintenance via telomerase
GO:0007080 P mitotic metaphase plate congression
GO:0010521 F telomerase inhibitor activity
GO:0031397 P negative regulation of protein ubiquitination
GO:0031647 P regulation of protein stability
GO:0032211 P negative regulation of telomere maintenance via telomerase
GO:0043231 C intracellular membrane-bounded organelle
GO:0051974 P negative regulation of telomerase activity
GO:0070034 F telomerase RNA binding
GO:0070198 P protein localization to chromosome, telomeric region
GO:1902570 P protein localization to nucleolus
GO:1904744 P positive regulation of telomeric DNA binding
GO:1904751 P positive regulation of protein localization to nucleolus
6829 O_BomoASG16147_3prime_partial:A_BomoASG_c29351_g1_i1
276bp
 TATA_box-binding_protein-like_protein_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0009790 P embryo development
6830 O_BomoASG16148_complete:A_BomoASG_c29351_g1_i2
230bp
 TATA_box-binding_protein-like_protein_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0009790 P embryo development
6831 O_BomoASG16149_complete:A_BomoASG_c29352_g1_i2
230bp
 transmembrane_protein_147_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
6832 O_BomoASG1614_internal:A_BomoASG_c10030_g1_i1
116bp
6833 O_BomoASG16150_complete:A_BomoASG_c29354_g1_i1
364bp
 protein_spindle-F_[Bombyx_mori]
6834 O_BomoASG16151_5prime_partial:A_BomoASG_c29354_g1_i2
233bp
 protein_spindle-F_[Bombyx_mori]
6835 O_BomoASG16152_complete:A_BomoASG_c29355_g1_i1
172bp
 splicing_factor_arginine/serine-rich_6_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
6836 O_BomoASG16153_complete:A_BomoASG_c29355_g1_i1
112bp
 splicing_factor_arginine/serine-rich_6_isoform_X4_[Bombyx_mori]
6837 O_BomoASG16154_complete:A_BomoASG_c29355_g1_i2
370bp
 splicing_factor_arginine/serine-rich_6_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
6838 O_BomoASG16155_complete:A_BomoASG_c29355_g1_i2
155bp
6839 O_BomoASG16156_complete:A_BomoASG_c29355_g1_i2
145bp
6840 O_BomoASG16157_complete:A_BomoASG_c29355_g1_i3
166bp
 splicing_factor_arginine/serine-rich_6_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
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