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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6031 O_BomoASG15429_internal:A_BomoASG_c29084_g1_i2
441bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
6032 O_BomoASG1542_5prime_partial:A_BomoASG_c9545_g1_i2
107bp
6033 O_BomoASG15430_complete:A_BomoASG_c29084_g1_i2
106bp
6034 O_BomoASG15431_3prime_partial:A_BomoASG_c29084_g1_i3
301bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
6035 O_BomoASG15432_5prime_partial:A_BomoASG_c29084_g1_i3
200bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
GO:0046872 F metal ion binding
6036 O_BomoASG15433_complete:A_BomoASG_c29084_g1_i3
106bp
6037 O_BomoASG15434_3prime_partial:A_BomoASG_c29085_g1_i1
259bp
 probable_ATP-dependent_RNA_helicase_DDX56_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
6038 O_BomoASG15435_internal:A_BomoASG_c29086_g1_i1
265bp
 cytochrome_P450_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006697 P ecdysone biosynthetic process
GO:0007391 P dorsal closure
GO:0007417 P central nervous system development
GO:0007494 P midgut development
GO:0008205 P ecdysone metabolic process
GO:0008258 P head involution
GO:0008362 P chitin-based embryonic cuticle biosynthetic process
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031966 C mitochondrial membrane
GO:0042767 F ecdysteroid 22-hydroxylase activity
GO:0045456 P ecdysteroid biosynthetic process
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
6039 O_BomoASG15436_complete:A_BomoASG_c29086_g1_i1
119bp
6040 O_BomoASG15437_3prime_partial:A_BomoASG_c29086_g1_i2
193bp
 cytochrome_P450,_partial_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006697 P ecdysone biosynthetic process
GO:0007391 P dorsal closure
GO:0007417 P central nervous system development
GO:0007494 P midgut development
GO:0008205 P ecdysone metabolic process
GO:0008258 P head involution
GO:0008362 P chitin-based embryonic cuticle biosynthetic process
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031966 C mitochondrial membrane
GO:0042767 F ecdysteroid 22-hydroxylase activity
GO:0045456 P ecdysteroid biosynthetic process
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
6041 O_BomoASG15438_complete:A_BomoASG_c29086_g1_i2
119bp
6042 O_BomoASG15439_internal:A_BomoASG_c29087_g1_i1
229bp
 uncharacterized_protein_LOC101744536_isoform_X1_[Bombyx_mori]
6043 O_BomoASG1543_internal:A_BomoASG_c9556_g1_i1
196bp
 poly_A_binding_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006401 P RNA catabolic process
GO:0006412 P translation
GO:0007596 P blood coagulation
GO:0008143 F poly(A) binding
GO:0008266 F poly(U) RNA binding
GO:0010494 C cytoplasmic stress granule
GO:0017130 F poly(C) RNA binding
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
6044 O_BomoASG15440_5prime_partial:A_BomoASG_c29087_g2_i1
266bp
 uncharacterized_protein_LOC101744536_isoform_X2_[Bombyx_mori]
6045 O_BomoASG15441_complete:A_BomoASG_c29088_g1_i2
480bp
 hippocampus_abundant_transcript_1_protein_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
6046 O_BomoASG15442_complete:A_BomoASG_c29088_g1_i2
135bp
6047 O_BomoASG15443_complete:A_BomoASG_c29089_g1_i2
451bp
 kelch-like_protein_40a_isoform_X2_[Bombyx_mori]
GO:0000932 C P-body
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0043234 C protein-containing complex
GO:0043393 P regulation of protein binding
6048 O_BomoASG15444_complete:A_BomoASG_c29089_g1_i3
451bp
 kelch-like_protein_40a_isoform_X2_[Bombyx_mori]
GO:0000932 C P-body
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0043234 C protein-containing complex
GO:0043393 P regulation of protein binding
6049 O_BomoASG15445_internal:A_BomoASG_c29090_g1_i1
110bp
 phosphopantothenoylcysteine_decarboxylase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004633 F phosphopantothenoylcysteine decarboxylase activity
GO:0005575 C cellular_component
GO:0015937 P coenzyme A biosynthetic process
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
6050 O_BomoASG15446_3prime_partial:A_BomoASG_c29090_g1_i2
141bp
 phosphopantothenoylcysteine_decarboxylase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004633 F phosphopantothenoylcysteine decarboxylase activity
GO:0005575 C cellular_component
GO:0015937 P coenzyme A biosynthetic process
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
6051 O_BomoASG15447_complete:A_BomoASG_c29090_g1_i2
119bp
6052 O_BomoASG15448_3prime_partial:A_BomoASG_c29090_g1_i3
199bp
 phosphopantothenoylcysteine_decarboxylase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004633 F phosphopantothenoylcysteine decarboxylase activity
GO:0005575 C cellular_component
GO:0015937 P coenzyme A biosynthetic process
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
6053 O_BomoASG15449_complete:A_BomoASG_c29090_g1_i3
115bp
6054 O_BomoASG1544_internal:A_BomoASG_c9561_g1_i1
165bp
 bromodomain_and_WD_repeat-containing_protein_1_[Bombyx_mori]
6055 O_BomoASG15450_complete:A_BomoASG_c29091_g1_i1
968bp
 alanine--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004813 F alanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006419 P alanyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0046872 F metal ion binding
6056 O_BomoASG15451_internal:A_BomoASG_c29092_g1_i1
476bp
 E3_ubiquitin-protein_ligase_MIB1_[Bombyx_mori]
GO:0001568 P blood vessel development
GO:0001701 P in utero embryonic development
GO:0001756 P somitogenesis
GO:0001841 P neural tube formation
GO:0001947 P heart looping
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006897 P endocytosis
GO:0007219 P Notch signaling pathway
GO:0007507 P heart development
GO:0008270 F zinc ion binding
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031410 C cytoplasmic vesicle
GO:0045665 P negative regulation of neuron differentiation
GO:0045807 P positive regulation of endocytosis
GO:0046872 F metal ion binding
6057 O_BomoASG15452_complete:A_BomoASG_c29092_g1_i1
193bp
6058 O_BomoASG15453_internal:A_BomoASG_c29094_g1_i1
180bp
 putative_nuclease_HARBI1_[Bombyx_mori]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
6059 O_BomoASG15454_5prime_partial:A_BomoASG_c29094_g1_i1
132bp
6060 O_BomoASG15455_internal:A_BomoASG_c29094_g1_i2
234bp
 putative_nuclease_HARBI1_[Bombyx_mori]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
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