SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5641 O_BomoASG15078_5prime_partial:A_BomoASG_c28927_g1_i3
385bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005215 F transporter activity
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0008139 F nuclear localization sequence binding
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
5642 O_BomoASG15079_complete:A_BomoASG_c28927_g1_i3
130bp
5643 O_BomoASG1507_internal:A_BomoASG_c9387_g1_i1
120bp
 uncharacterized_protein_LOC105841649_[Bombyx_mori]
5644 O_BomoASG15080_5prime_partial:A_BomoASG_c28927_g1_i4
288bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005215 F transporter activity
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0008139 F nuclear localization sequence binding
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
5645 O_BomoASG15081_5prime_partial:A_BomoASG_c28927_g1_i4
183bp
5646 O_BomoASG15082_3prime_partial:A_BomoASG_c28927_g1_i4
118bp
5647 O_BomoASG15083_complete:A_BomoASG_c28927_g1_i5
218bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005215 F transporter activity
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0008139 F nuclear localization sequence binding
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
5648 O_BomoASG15084_5prime_partial:A_BomoASG_c28927_g1_i5
132bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
5649 O_BomoASG15085_complete:A_BomoASG_c28927_g1_i5
130bp
5650 O_BomoASG15086_internal:A_BomoASG_c28929_g1_i1
449bp
 histone-lysine_N-methyltransferase_SETD1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000791 C euchromatin
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0035327 C euchromatin
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044648 P histone H3-K4 dimethylation
GO:0046427 P positive regulation of receptor signaling pathway via JAK-STAT
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
GO:0080182 P histone H3-K4 trimethylation
5651 O_BomoASG15087_3prime_partial:A_BomoASG_c28929_g1_i1
165bp
5652 O_BomoASG15088_5prime_partial:A_BomoASG_c28929_g1_i1
119bp
5653 O_BomoASG15089_internal:A_BomoASG_c28929_g1_i2
395bp
 histone-lysine_N-methyltransferase_SETD1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000791 C euchromatin
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0035327 C euchromatin
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044648 P histone H3-K4 dimethylation
GO:0046427 P positive regulation of receptor signaling pathway via JAK-STAT
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
GO:0080182 P histone H3-K4 trimethylation
5654 O_BomoASG1508_3prime_partial:A_BomoASG_c9389_g1_i1
989bp
 eukaryotic_translation_initiation_factor_3_subunit_A_[Bombyx_mori]
GO:0001731 P formation of translation preinitiation complex
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0005852 C eukaryotic translation initiation factor 3 complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0016282 C eukaryotic 43S preinitiation complex
GO:0033290 C eukaryotic 48S preinitiation complex
5655 O_BomoASG15090_3prime_partial:A_BomoASG_c28929_g1_i2
165bp
5656 O_BomoASG15091_5prime_partial:A_BomoASG_c28929_g1_i2
119bp
5657 O_BomoASG15092_3prime_partial:A_BomoASG_c28930_g1_i1
354bp
 uncharacterized_protein_LOC101746807_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0007275 P multicellular organism development
GO:0007458 P progression of morphogenetic furrow involved in compound eye morphogenesis
GO:0007552 P metamorphosis
GO:0007562 P eclosion
GO:0008219 P cell death
GO:0009608 P response to symbiont
GO:0010629 P negative regulation of gene expression
GO:0010906 P regulation of glucose metabolic process
GO:0030707 P ovarian follicle cell development
GO:0035070 P salivary gland histolysis
GO:0035071 P salivary gland cell autophagic cell death
GO:0035072 P ecdysone-mediated induction of salivary gland cell autophagic cell death
GO:0035075 P response to ecdysone
GO:0035193 P larval central nervous system remodeling
GO:0040034 P regulation of development, heterochronic
GO:0042332 P gravitaxis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0048747 P muscle cell development
GO:0048808 P male genitalia morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0071390 P cellular response to ecdysone
5658 O_BomoASG15093_internal:A_BomoASG_c28930_g1_i2
191bp
 uncharacterized_protein_LOC101746807_[Bombyx_mori]
5659 O_BomoASG15094_internal:A_BomoASG_c28931_g2_i1
213bp
 oxysterol-binding_protein-related_protein_3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008289 F lipid binding
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0031965 C nuclear membrane
GO:0032433 C filopodium tip
GO:0042995 C cell projection
GO:0097038 C perinuclear endoplasmic reticulum
5660 O_BomoASG15095_5prime_partial:A_BomoASG_c28931_g2_i1
119bp
5661 O_BomoASG15096_internal:A_BomoASG_c28931_g2_i2
208bp
 oxysterol-binding_protein-related_protein_3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008289 F lipid binding
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0031965 C nuclear membrane
GO:0032433 C filopodium tip
GO:0042995 C cell projection
GO:0097038 C perinuclear endoplasmic reticulum
5662 O_BomoASG15097_5prime_partial:A_BomoASG_c28931_g2_i2
163bp
 oxysterol-binding_protein-related_protein_3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008150 P biological_process
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0031965 C nuclear membrane
GO:0097038 C perinuclear endoplasmic reticulum
5663 O_BomoASG15098_internal:A_BomoASG_c28932_g1_i2
249bp
 zinc_finger_protein_98_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001206 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001501 P skeletal system development
GO:0001823 P mesonephros development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007417 P central nervous system development
GO:0008022 F protein C-terminus binding
GO:0008285 P negative regulation of cell population proliferation
GO:0009880 P embryonic pattern specification
GO:0009952 P anterior/posterior pattern specification
GO:0016567 P protein ubiquitination
GO:0016604 C nuclear body
GO:0016605 C PML body
GO:0016607 C nuclear speck
GO:0017053 C transcription repressor complex
GO:0019904 F protein domain specific binding
GO:0030097 P hemopoiesis
GO:0030099 P myeloid cell differentiation
GO:0032332 P positive regulation of chondrocyte differentiation
GO:0034504 P protein localization to nucleus
GO:0035116 P embryonic hindlimb morphogenesis
GO:0035136 P forelimb morphogenesis
GO:0035137 P hindlimb morphogenesis
GO:0042733 P embryonic digit morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043065 P positive regulation of apoptotic process
GO:0045600 P positive regulation of fat cell differentiation
GO:0045638 P negative regulation of myeloid cell differentiation
GO:0045778 P positive regulation of ossification
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048133 P male germ-line stem cell asymmetric division
GO:0051138 P positive regulation of NK T cell differentiation
GO:0051216 P cartilage development
GO:0061036 P positive regulation of cartilage development
5664 O_BomoASG15099_5prime_partial:A_BomoASG_c28933_g1_i1
198bp
 CDP-diacylglycerol--inositol_3-phosphatidyltransferase_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003881 F CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
GO:0019992 F diacylglycerol binding
GO:0030145 F manganese ion binding
GO:0030246 F carbohydrate binding
GO:0043178 F alcohol binding
GO:0046341 P CDP-diacylglycerol metabolic process
5665 O_BomoASG1509_5prime_partial:A_BomoASG_c9389_g1_i1
195bp
 hypothetical_protein_AC67_1756,_partial_[Escherichia_coli_2-052-05_S4_C1]
5666 O_BomoASG150_internal:A_BomoASG_c1127_g1_i1
108bp
 inner_centromere_protein_A_[Bombyx_mori]
5667 O_BomoASG15100_complete:A_BomoASG_c28933_g1_i2
220bp
 CDP-diacylglycerol--inositol_3-phosphatidyltransferase_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003881 F CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
GO:0019992 F diacylglycerol binding
GO:0030145 F manganese ion binding
GO:0030246 F carbohydrate binding
GO:0043178 F alcohol binding
GO:0046341 P CDP-diacylglycerol metabolic process
5668 O_BomoASG15101_3prime_partial:A_BomoASG_c28934_g4_i1
1151bp
 transcriptional_regulator_ATRX_homolog_isoform_X2_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005722 C beta-heterochromatin
GO:0006281 P DNA repair
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008347 P glial cell migration
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0032508 P DNA duplex unwinding
GO:0042585 C germinal vesicle
GO:0046328 P regulation of JNK cascade
GO:0051276 P chromosome organization
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0097193 P intrinsic apoptotic signaling pathway
5669 O_BomoASG15102_complete:A_BomoASG_c28934_g4_i1
277bp
5670 O_BomoASG15103_complete:A_BomoASG_c28934_g4_i1
135bp
previous next from show/32479

- SilkBase 1999-2023 -