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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5551 O_BomoASG14998_complete:A_BomoASG_c28888_g1_i1
102bp
 gametocyte-specific_factor_1-like_[Bombyx_mori]
GO:0046872 F metal ion binding
5552 O_BomoASG14999_5prime_partial:A_BomoASG_c28890_g1_i1
907bp
 zinc_finger_CCCH_domain-containing_protein_13_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
5553 O_BomoASG1499_complete:A_BomoASG_c9374_g1_i1
250bp
 transcription_factor_A,_mitochondrial_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001223 F transcription coactivator binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006261 P DNA-dependent DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006356 P regulation of transcription by RNA polymerase I
GO:0006366 P transcription by RNA polymerase II
GO:0006390 P mitochondrial transcription
GO:0006391 P transcription initiation from mitochondrial promoter
GO:0007005 P mitochondrion organization
GO:0008301 F DNA binding, bending
GO:0031072 F heat shock protein binding
GO:0033108 P mitochondrial respiratory chain complex assembly
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070363 F mitochondrial promoter sequence-specific DNA binding
5554 O_BomoASG149_internal:A_BomoASG_c1125_g1_i1
113bp
 intraflagellar_transport_protein_122_homolog_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0007275 P multicellular organism development
GO:0030030 P cell projection organization
GO:0030991 C intraciliary transport particle A
GO:0035721 P intraciliary retrograde transport
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0061512 P protein localization to cilium
GO:0072372 C cilium
5555 O_BomoASG14_internal:A_BomoASG_c107_g1_i1
106bp
 MOCS1AB_[Bombyx_mori]
GO:0006777 P Mo-molybdopterin cofactor biosynthetic process
5556 O_BomoASG15000_3prime_partial:A_BomoASG_c28890_g1_i1
168bp
5557 O_BomoASG15001_complete:A_BomoASG_c28890_g1_i1
142bp
5558 O_BomoASG15002_complete:A_BomoASG_c28890_g1_i2
1014bp
 zinc_finger_CCCH_domain-containing_protein_13_isoform_X1_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008150 P biological_process
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
5559 O_BomoASG15003_complete:A_BomoASG_c28890_g1_i2
172bp
5560 O_BomoASG15004_complete:A_BomoASG_c28890_g1_i2
142bp
5561 O_BomoASG15005_complete:A_BomoASG_c28890_g1_i3
998bp
 zinc_finger_CCCH_domain-containing_protein_13_isoform_X3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
5562 O_BomoASG15006_complete:A_BomoASG_c28890_g1_i3
156bp
5563 O_BomoASG15007_complete:A_BomoASG_c28890_g1_i3
142bp
5564 O_BomoASG15008_3prime_partial:A_BomoASG_c28891_g1_i1
533bp
 zinc_finger_protein_791_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
5565 O_BomoASG15009_5prime_partial:A_BomoASG_c28892_g1_i1
539bp
 leucine-rich_repeat-containing_protein_40_isoform_X1_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008150 P biological_process
5566 O_BomoASG1500_internal:A_BomoASG_c9382_g1_i1
162bp
 inactive_pancreatic_lipase-related_protein_1_[Bombyx_mori]
GO:0004806 F triglyceride lipase activity
GO:0005576 C extracellular region
GO:0006629 P lipid metabolic process
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0052689 F carboxylic ester hydrolase activity
5567 O_BomoASG15010_5prime_partial:A_BomoASG_c28894_g1_i1
491bp
 VWFA_and_cache_domain-containing_protein_1_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
5568 O_BomoASG15011_5prime_partial:A_BomoASG_c28895_g1_i1
313bp
 replication_factor_C_subunit_3_[Bombyx_mori]
GO:0000722 P telomere maintenance via recombination
GO:0000731 P DNA synthesis involved in DNA repair
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005663 C DNA replication factor C complex
GO:0006260 P DNA replication
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0016887 F ATP hydrolysis activity
GO:0019985 P translesion synthesis
GO:0031390 C Ctf18 RFC-like complex
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0042276 P error-prone translesion synthesis
GO:0042769 P obsolete DNA damage response, detection of DNA damage
GO:0043142 F single-stranded DNA helicase activity
GO:0046683 P response to organophosphorus
GO:0070987 P error-free translesion synthesis
GO:1900264 P positive regulation of DNA-directed DNA polymerase activity
GO:1901796 P regulation of signal transduction by p53 class mediator
5569 O_BomoASG15012_complete:A_BomoASG_c28895_g1_i2
356bp
 replication_factor_C_subunit_3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005634 C nucleus
GO:0005663 C DNA replication factor C complex
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0016887 F ATP hydrolysis activity
GO:0031390 C Ctf18 RFC-like complex
GO:0043142 F single-stranded DNA helicase activity
GO:0046683 P response to organophosphorus
GO:1900264 P positive regulation of DNA-directed DNA polymerase activity
5570 O_BomoASG15013_3prime_partial:A_BomoASG_c28896_g1_i1
523bp
 uncharacterized_protein_LOC101746579_isoform_X1_[Bombyx_mori]
5571 O_BomoASG15014_3prime_partial:A_BomoASG_c28896_g1_i2
523bp
 uncharacterized_protein_LOC101746579_isoform_X1_[Bombyx_mori]
5572 O_BomoASG15015_3prime_partial:A_BomoASG_c28896_g1_i3
523bp
 uncharacterized_protein_LOC101746579_isoform_X1_[Bombyx_mori]
5573 O_BomoASG15016_3prime_partial:A_BomoASG_c28896_g1_i4
523bp
 uncharacterized_protein_LOC101746579_isoform_X1_[Bombyx_mori]
5574 O_BomoASG15017_3prime_partial:A_BomoASG_c28896_g1_i6
523bp
 uncharacterized_protein_LOC101746579_isoform_X1_[Bombyx_mori]
5575 O_BomoASG15018_internal:A_BomoASG_c28896_g1_i7
594bp
 uncharacterized_protein_LOC101746579_isoform_X2_[Bombyx_mori]
5576 O_BomoASG15019_3prime_partial:A_BomoASG_c28896_g1_i8
523bp
 uncharacterized_protein_LOC101746579_isoform_X1_[Bombyx_mori]
5577 O_BomoASG1501_complete:A_BomoASG_c9384_g2_i1
409bp
 PREDICTED:_reticulon-3-like_isoform_X2_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005635 C nuclear envelope
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0006915 P apoptotic process
GO:0007399 P nervous system development
GO:0007413 P axonal fasciculation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021801 P cerebral cortex radial glia-guided migration
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0030308 P negative regulation of cell growth
GO:0030334 P regulation of cell migration
GO:0030517 P negative regulation of axon extension
GO:0042981 P regulation of apoptotic process
GO:0042995 C cell projection
GO:0044822 F RNA binding
GO:0050771 P negative regulation of axonogenesis
GO:0051292 P nuclear pore complex assembly
GO:0051960 P regulation of nervous system development
GO:0060317 P cardiac epithelial to mesenchymal transition
GO:0070062 C extracellular exosome
GO:0071786 P endoplasmic reticulum tubular network organization
GO:0071787 P endoplasmic reticulum tubular network formation
GO:0097481 C postsynaptic density
GO:2000172 P regulation of branching morphogenesis of a nerve
5578 O_BomoASG15020_3prime_partial:A_BomoASG_c28896_g1_i9
523bp
 uncharacterized_protein_LOC101746579_isoform_X1_[Bombyx_mori]
5579 O_BomoASG15021_3prime_partial:A_BomoASG_c28896_g1_i10
523bp
 uncharacterized_protein_LOC101746579_isoform_X1_[Bombyx_mori]
5580 O_BomoASG15022_complete:A_BomoASG_c28897_g1_i1
123bp
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