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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5491 O_BomoASG14943_5prime_partial:A_BomoASG_c28868_g1_i1
140bp
5492 O_BomoASG14944_internal:A_BomoASG_c28869_g1_i1
272bp
 hypothetical_protein_[Escherichia_coli]
5493 O_BomoASG14945_5prime_partial:A_BomoASG_c28870_g1_i2
230bp
 nuclear_pore_complex_protein_Nup155_[Bombyx_mori]
GO:0000972 P transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006998 P nuclear envelope organization
GO:0007077 P mitotic nuclear membrane disassembly
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031965 C nuclear membrane
GO:0036228 P protein localization to nuclear inner membrane
GO:0044611 C nuclear pore inner ring
GO:0051028 P mRNA transport
GO:0075733 P intracellular transport of virus
GO:0086014 P atrial cardiac muscle cell action potential
GO:1900034 P regulation of cellular response to heat
5494 O_BomoASG14946_5prime_partial:A_BomoASG_c28870_g1_i2
112bp
5495 O_BomoASG14947_3prime_partial:A_BomoASG_c28870_g1_i2
101bp
5496 O_BomoASG14948_5prime_partial:A_BomoASG_c28871_g2_i1
451bp
 tyrosine-protein_kinase_CSK_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001817 P regulation of cytokine production
GO:0002250 P adaptive immune response
GO:0002376 P immune system process
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007417 P central nervous system development
GO:0007420 P brain development
GO:0008285 P negative regulation of cell population proliferation
GO:0010989 P negative regulation of low-density lipoprotein particle clearance
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0019903 F protein phosphatase binding
GO:0030154 P cell differentiation
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0032715 P negative regulation of interleukin-6 production
GO:0033673 P negative regulation of kinase activity
GO:0034236 F protein kinase A catalytic subunit binding
GO:0034332 P adherens junction organization
GO:0035556 P intracellular signal transduction
GO:0038083 P peptidyl-tyrosine autophosphorylation
GO:0042802 F identical protein binding
GO:0042997 P negative regulation of Golgi to plasma membrane protein transport
GO:0043406 P positive regulation of MAP kinase activity
GO:0045087 P innate immune response
GO:0045121 C membrane raft
GO:0045779 P negative regulation of bone resorption
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048709 P oligodendrocyte differentiation
GO:0050765 P negative regulation of phagocytosis
GO:0050863 P regulation of T cell activation
GO:0060368 P regulation of Fc receptor mediated stimulatory signaling pathway
GO:0070062 C extracellular exosome
GO:0070064 F proline-rich region binding
GO:0070373 P negative regulation of ERK1 and ERK2 cascade
GO:0071375 P cellular response to peptide hormone stimulus
5497 O_BomoASG14949_complete:A_BomoASG_c28871_g2_i1
180bp
5498 O_BomoASG1494_3prime_partial:A_BomoASG_c9337_g1_i1
99bp
5499 O_BomoASG14950_complete:A_BomoASG_c28871_g2_i2
580bp
 tyrosine-protein_kinase_CSK_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001817 P regulation of cytokine production
GO:0002250 P adaptive immune response
GO:0002376 P immune system process
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007417 P central nervous system development
GO:0007420 P brain development
GO:0008285 P negative regulation of cell population proliferation
GO:0010989 P negative regulation of low-density lipoprotein particle clearance
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0019903 F protein phosphatase binding
GO:0030154 P cell differentiation
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0032715 P negative regulation of interleukin-6 production
GO:0033673 P negative regulation of kinase activity
GO:0034236 F protein kinase A catalytic subunit binding
GO:0034332 P adherens junction organization
GO:0035556 P intracellular signal transduction
GO:0038083 P peptidyl-tyrosine autophosphorylation
GO:0042802 F identical protein binding
GO:0042997 P negative regulation of Golgi to plasma membrane protein transport
GO:0043406 P positive regulation of MAP kinase activity
GO:0045087 P innate immune response
GO:0045121 C membrane raft
GO:0045779 P negative regulation of bone resorption
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048709 P oligodendrocyte differentiation
GO:0050765 P negative regulation of phagocytosis
GO:0050863 P regulation of T cell activation
GO:0060368 P regulation of Fc receptor mediated stimulatory signaling pathway
GO:0070062 C extracellular exosome
GO:0070064 F proline-rich region binding
GO:0070373 P negative regulation of ERK1 and ERK2 cascade
GO:0071375 P cellular response to peptide hormone stimulus
5500 O_BomoASG14951_complete:A_BomoASG_c28871_g2_i2
180bp
5501 O_BomoASG14952_complete:A_BomoASG_c28871_g2_i3
580bp
 tyrosine-protein_kinase_CSK_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001817 P regulation of cytokine production
GO:0002250 P adaptive immune response
GO:0002376 P immune system process
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007417 P central nervous system development
GO:0007420 P brain development
GO:0008285 P negative regulation of cell population proliferation
GO:0010989 P negative regulation of low-density lipoprotein particle clearance
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0019903 F protein phosphatase binding
GO:0030154 P cell differentiation
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0032715 P negative regulation of interleukin-6 production
GO:0033673 P negative regulation of kinase activity
GO:0034236 F protein kinase A catalytic subunit binding
GO:0034332 P adherens junction organization
GO:0035556 P intracellular signal transduction
GO:0038083 P peptidyl-tyrosine autophosphorylation
GO:0042802 F identical protein binding
GO:0042997 P negative regulation of Golgi to plasma membrane protein transport
GO:0043406 P positive regulation of MAP kinase activity
GO:0045087 P innate immune response
GO:0045121 C membrane raft
GO:0045779 P negative regulation of bone resorption
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048709 P oligodendrocyte differentiation
GO:0050765 P negative regulation of phagocytosis
GO:0050863 P regulation of T cell activation
GO:0060368 P regulation of Fc receptor mediated stimulatory signaling pathway
GO:0070062 C extracellular exosome
GO:0070064 F proline-rich region binding
GO:0070373 P negative regulation of ERK1 and ERK2 cascade
GO:0071375 P cellular response to peptide hormone stimulus
5502 O_BomoASG14953_complete:A_BomoASG_c28871_g2_i3
180bp
5503 O_BomoASG14954_internal:A_BomoASG_c28872_g1_i1
366bp
 ATP-binding_cassette_sub-family_A_member_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0044351 P macropinocytosis
GO:0055085 P transmembrane transport
5504 O_BomoASG14955_5prime_partial:A_BomoASG_c28872_g1_i1
156bp
5505 O_BomoASG14956_internal:A_BomoASG_c28872_g2_i1
141bp
 ATP-binding_cassette_sub-family_A_member_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005319 F lipid transporter activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0044267 P cellular protein metabolic process
GO:0051384 P response to glucocorticoid
GO:0055085 P transmembrane transport
GO:0097208 C alveolar lamellar body
GO:0097232 C lamellar body membrane
GO:0097233 C alveolar lamellar body membrane
5506 O_BomoASG14957_5prime_partial:A_BomoASG_c28872_g2_i1
130bp
5507 O_BomoASG14958_3prime_partial:A_BomoASG_c28872_g2_i2
567bp
 uncharacterized_protein_LOC105841344,_partial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002790 P peptide secretion
GO:0005102 F signaling receptor binding
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005543 F phospholipid binding
GO:0005548 F phospholipid transporter activity
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006497 P protein lipidation
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0006911 P phagocytosis, engulfment
GO:0007040 P lysosome organization
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007584 P response to nutrient
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008509 F anion transmembrane transporter activity
GO:0009897 C external side of plasma membrane
GO:0009986 C cell surface
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010875 P positive regulation of cholesterol efflux
GO:0010887 P negative regulation of cholesterol storage
GO:0015485 F cholesterol binding
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016197 P endosomal transport
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019905 F syntaxin binding
GO:0030139 C endocytic vesicle
GO:0030301 P cholesterol transport
GO:0030819 P obsolete positive regulation of cAMP biosynthetic process
GO:0031267 F small GTPase binding
GO:0032367 P intracellular cholesterol transport
GO:0032489 P regulation of Cdc42 protein signal transduction
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034188 F apolipoprotein A-I receptor activity
GO:0034364 C high-density lipoprotein particle
GO:0034380 P high-density lipoprotein particle assembly
GO:0034616 P response to laminar fluid shear stress
GO:0038027 P apolipoprotein A-I-mediated signaling pathway
GO:0042157 P lipoprotein metabolic process
GO:0042158 P lipoprotein biosynthetic process
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0043231 C intracellular membrane-bounded organelle
GO:0043691 P reverse cholesterol transport
GO:0045121 C membrane raft
GO:0045332 P phospholipid translocation
GO:0045335 C phagocytic vesicle
GO:0048471 C perinuclear region of cytoplasm
GO:0050702 P interleukin-1 beta production
GO:0051117 F ATPase binding
GO:0055091 P phospholipid homeostasis
GO:0055098 P cellular response to low-density lipoprotein particle stimulus
GO:0060155 P platelet dense granule organization
GO:0071222 P cellular response to lipopolysaccharide
GO:0071300 P cellular response to retinoic acid
GO:0071397 P cellular response to cholesterol
GO:0098656 P anion transmembrane transport
5508 O_BomoASG14959_complete:A_BomoASG_c28872_g2_i2
155bp
5509 O_BomoASG1495_complete:A_BomoASG_c9343_g1_i1
218bp
 vesicle-trafficking_protein_SEC22b-B_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0005484 F SNAP receptor activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0031201 C SNARE complex
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0048280 P vesicle fusion with Golgi apparatus
5510 O_BomoASG14960_5prime_partial:A_BomoASG_c28872_g2_i2
131bp
5511 O_BomoASG14961_complete:A_BomoASG_c28873_g1_i1
342bp
 aprataxin_and_PNK-like_factor_isoform_X6_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016829 F lyase activity
GO:0035861 C site of double-strand break
GO:0045191 P regulation of isotype switching
GO:0046872 F metal ion binding
GO:0051106 P positive regulation of DNA ligation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5512 O_BomoASG14962_complete:A_BomoASG_c28873_g1_i2
363bp
 aprataxin_and_PNK-like_factor_isoform_X6_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016829 F lyase activity
GO:0035861 C site of double-strand break
GO:0045191 P regulation of isotype switching
GO:0046872 F metal ion binding
GO:0051106 P positive regulation of DNA ligation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5513 O_BomoASG14963_complete:A_BomoASG_c28873_g1_i3
104bp
 aprataxin_and_PNK-like_factor_isoform_X4_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016829 F lyase activity
GO:0035861 C site of double-strand break
GO:0045191 P regulation of isotype switching
GO:0046872 F metal ion binding
GO:0051106 P positive regulation of DNA ligation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5514 O_BomoASG14964_complete:A_BomoASG_c28873_g1_i4
363bp
 aprataxin_and_PNK-like_factor_isoform_X6_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016829 F lyase activity
GO:0035861 C site of double-strand break
GO:0045191 P regulation of isotype switching
GO:0046872 F metal ion binding
GO:0051106 P positive regulation of DNA ligation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5515 O_BomoASG14965_complete:A_BomoASG_c28873_g1_i5
388bp
 aprataxin_and_PNK-like_factor_isoform_X2_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016829 F lyase activity
GO:0035861 C site of double-strand break
GO:0045191 P regulation of isotype switching
GO:0046872 F metal ion binding
GO:0051106 P positive regulation of DNA ligation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5516 O_BomoASG14966_5prime_partial:A_BomoASG_c28873_g1_i5
168bp
5517 O_BomoASG14967_complete:A_BomoASG_c28874_g1_i1
642bp
 c-Cbl-associated_protein_isoform_A_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005925 C focal adhesion
GO:0006936 P muscle contraction
GO:0007015 P actin filament organization
GO:0007155 P cell adhesion
GO:0008134 F transcription factor binding
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0031589 P cell-substrate adhesion
GO:0043410 P positive regulation of MAPK cascade
GO:0051495 P positive regulation of cytoskeleton organization
GO:0051496 P positive regulation of stress fiber assembly
5518 O_BomoASG14968_complete:A_BomoASG_c28874_g1_i1
102bp
5519 O_BomoASG14969_complete:A_BomoASG_c28874_g1_i2
1242bp
 C-Cbl-associated_protein_isoform_A_[Operophtera_brumata]
5520 O_BomoASG1496_internal:A_BomoASG_c9345_g1_i1
172bp
 hypothetical_protein_KGM_209963_[Danaus_plexippus_plexippus]
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