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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4681 O_BomoASG14213_5prime_partial:A_BomoASG_c28556_g1_i1
162bp
4682 O_BomoASG14214_5prime_partial:A_BomoASG_c28556_g1_i1
122bp
4683 O_BomoASG14215_internal:A_BomoASG_c28557_g1_i1
102bp
 alsin_[Bombyx_mori]
4684 O_BomoASG14216_3prime_partial:A_BomoASG_c28557_g1_i2
236bp
 alsin_[Bombyx_mori]
GO:0001662 P behavioral fear response
GO:0001701 P in utero embryonic development
GO:0001726 C ruffle
GO:0001881 P receptor recycling
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005769 C early endosome
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0006979 P response to oxidative stress
GO:0007032 P endosome organization
GO:0007041 P lysosomal transport
GO:0007409 P axonogenesis
GO:0007528 P neuromuscular junction development
GO:0007626 P locomotory behavior
GO:0008104 P protein localization
GO:0008219 P cell death
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016050 P vesicle organization
GO:0016197 P endosomal transport
GO:0016601 P Rac protein signal transduction
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0030027 C lamellipodium
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031982 C vesicle
GO:0035023 P regulation of Rho protein signal transduction
GO:0035249 P synaptic transmission, glutamatergic
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043087 P regulation of GTPase activity
GO:0043197 C dendritic spine
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0043539 F protein serine/threonine kinase activator activity
GO:0043547 P positive regulation of GTPase activity
GO:0045860 P positive regulation of protein kinase activity
GO:0048365 F small GTPase binding
GO:0048812 P neuron projection morphogenesis
GO:0051036 P regulation of endosome size
GO:0051260 P protein homooligomerization
GO:0071902 P positive regulation of protein serine/threonine kinase activity
4685 O_BomoASG14217_internal:A_BomoASG_c28557_g1_i3
485bp
 alsin_[Bombyx_mori]
GO:0001662 P behavioral fear response
GO:0001701 P in utero embryonic development
GO:0001726 C ruffle
GO:0001881 P receptor recycling
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005769 C early endosome
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0006979 P response to oxidative stress
GO:0007032 P endosome organization
GO:0007041 P lysosomal transport
GO:0007409 P axonogenesis
GO:0007528 P neuromuscular junction development
GO:0007626 P locomotory behavior
GO:0008104 P protein localization
GO:0008219 P cell death
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016050 P vesicle organization
GO:0016197 P endosomal transport
GO:0016601 P Rac protein signal transduction
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0030027 C lamellipodium
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031982 C vesicle
GO:0035023 P regulation of Rho protein signal transduction
GO:0035249 P synaptic transmission, glutamatergic
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043087 P regulation of GTPase activity
GO:0043197 C dendritic spine
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0043539 F protein serine/threonine kinase activator activity
GO:0043547 P positive regulation of GTPase activity
GO:0045860 P positive regulation of protein kinase activity
GO:0048365 F small GTPase binding
GO:0048812 P neuron projection morphogenesis
GO:0051036 P regulation of endosome size
GO:0051260 P protein homooligomerization
GO:0071902 P positive regulation of protein serine/threonine kinase activity
4686 O_BomoASG14218_complete:A_BomoASG_c28558_g1_i1
598bp
 oxygen_resistance_gene_1_isoform_X9_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030374 F nuclear receptor coactivator activity
GO:0035257 F nuclear receptor binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
4687 O_BomoASG14219_3prime_partial:A_BomoASG_c28558_g1_i1
124bp
 uncharacterized_protein_LOC105841624_isoform_X1_[Bombyx_mori]
4688 O_BomoASG1421_internal:A_BomoASG_c8863_g1_i1
104bp
 atherin-like_[Bombyx_mori]
4689 O_BomoASG14220_complete:A_BomoASG_c28558_g1_i2
979bp
 oxygen_resistance_gene_1_isoform_X4_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030374 F nuclear receptor coactivator activity
GO:0035257 F nuclear receptor binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
4690 O_BomoASG14221_complete:A_BomoASG_c28558_g1_i2
104bp
4691 O_BomoASG14222_complete:A_BomoASG_c28558_g1_i3
824bp
 oxygen_resistance_gene_1_isoform_X9_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030374 F nuclear receptor coactivator activity
GO:0035257 F nuclear receptor binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
4692 O_BomoASG14223_complete:A_BomoASG_c28558_g1_i3
104bp
4693 O_BomoASG14224_5prime_partial:A_BomoASG_c28558_g1_i4
954bp
 oxygen_resistance_gene_1_isoform_X3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030374 F nuclear receptor coactivator activity
GO:0035257 F nuclear receptor binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
4694 O_BomoASG14225_complete:A_BomoASG_c28558_g1_i4
104bp
4695 O_BomoASG14226_internal:A_BomoASG_c28558_g2_i1
315bp
 Envelope_fusion_protein_[Papilio_xuthus]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019012 C virion component
GO:0019031 C viral envelope
GO:0020002 C host cell plasma membrane
GO:0033644 C host cell membrane
GO:0039654 P fusion of virus membrane with host endosome membrane
GO:0039663 P membrane fusion involved in viral entry into host cell
GO:0046718 P viral entry into host cell
GO:0055036 C virion membrane
4696 O_BomoASG14227_internal:A_BomoASG_c28558_g2_i2
190bp
 Envelope_fusion_protein_[Papilio_xuthus]
4697 O_BomoASG14228_5prime_partial:A_BomoASG_c28560_g1_i1
156bp
 cyclin-dependent_kinase_2-interacting_protein-like_[Helicoverpa_armigera]
4698 O_BomoASG14229_3prime_partial:A_BomoASG_c28561_g1_i1
399bp
 nuclear_factor_of_activated_T-cells_5_isoform_X2_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001816 P cytokine production
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006970 P response to osmotic stress
GO:0007165 P signal transduction
GO:0007588 P excretion
GO:0010628 P positive regulation of gene expression
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070884 P regulation of calcineurin-NFAT signaling cascade
4699 O_BomoASG1422_internal:A_BomoASG_c8878_g1_i1
266bp
 uncharacterized_protein_LOC101742281_isoform_X2_[Bombyx_mori]
4700 O_BomoASG14230_internal:A_BomoASG_c28561_g1_i2
198bp
 nuclear_factor_of_activated_T-cells_5_isoform_X4_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001816 P cytokine production
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006970 P response to osmotic stress
GO:0007165 P signal transduction
GO:0007588 P excretion
GO:0010628 P positive regulation of gene expression
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070884 P regulation of calcineurin-NFAT signaling cascade
4701 O_BomoASG14231_3prime_partial:A_BomoASG_c28561_g1_i3
342bp
 nuclear_factor_of_activated_T-cells_5_isoform_X4_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001816 P cytokine production
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006970 P response to osmotic stress
GO:0007165 P signal transduction
GO:0007588 P excretion
GO:0010628 P positive regulation of gene expression
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070884 P regulation of calcineurin-NFAT signaling cascade
4702 O_BomoASG14232_3prime_partial:A_BomoASG_c28563_g1_i1
303bp
 N-glycosylase/DNA_lyase_[Bombyx_mori]
GO:0003684 F damaged DNA binding
GO:0003824 F catalytic activity
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008534 F oxidized purine nucleobase lesion DNA N-glycosylase activity
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0016829 F lyase activity
GO:0019104 F DNA N-glycosylase activity
GO:0034599 P cellular response to oxidative stress
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4703 O_BomoASG14233_complete:A_BomoASG_c28563_g1_i2
158bp
 N-glycosylase/DNA_lyase_[Bombyx_mori]
GO:0000702 F oxidized base lesion DNA N-glycosylase activity
GO:0002526 P acute inflammatory response
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003824 F catalytic activity
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0006979 P response to oxidative stress
GO:0007568 P aging
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0008534 F oxidized purine nucleobase lesion DNA N-glycosylase activity
GO:0009314 P response to radiation
GO:0009416 P response to light stimulus
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0016829 F lyase activity
GO:0019104 F DNA N-glycosylase activity
GO:0032355 P response to estradiol
GO:0032357 F oxidized purine DNA binding
GO:0033158 P obsolete regulation of protein import into nucleus, translocation
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0034039 F 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity
GO:0042493 P response to xenobiotic stimulus
GO:0043066 P negative regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0045471 P response to ethanol
GO:0051593 P response to folic acid
GO:0071276 P cellular response to cadmium ion
GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
4704 O_BomoASG14234_3prime_partial:A_BomoASG_c28563_g1_i2
131bp
 N-glycosylase/DNA_lyase_[Bombyx_mori]
GO:0003684 F damaged DNA binding
GO:0003824 F catalytic activity
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008534 F oxidized purine nucleobase lesion DNA N-glycosylase activity
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0016829 F lyase activity
GO:0019104 F DNA N-glycosylase activity
GO:0034599 P cellular response to oxidative stress
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4705 O_BomoASG14235_internal:A_BomoASG_c28564_g1_i1
128bp
4706 O_BomoASG14236_5prime_partial:A_BomoASG_c28564_g1_i1
114bp
4707 O_BomoASG14237_5prime_partial:A_BomoASG_c28564_g1_i1
108bp
 THO_complex_subunit_1_[Bombyx_mori]
4708 O_BomoASG14238_complete:A_BomoASG_c28564_g1_i2
674bp
 THO_complex_subunit_1_[Bombyx_mori]
GO:0000018 P regulation of DNA recombination
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
GO:0031297 P replication fork processing
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0042981 P regulation of apoptotic process
GO:0045171 C intercellular bridge
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048297 P negative regulation of isotype switching to IgA isotypes
GO:0051028 P mRNA transport
GO:2000002 P negative regulation of DNA damage checkpoint
4709 O_BomoASG14239_5prime_partial:A_BomoASG_c28564_g1_i2
252bp
4710 O_BomoASG1423_internal:A_BomoASG_c8887_g1_i1
100bp
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