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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4621 O_BomoASG1415_internal:A_BomoASG_c8724_g1_i1
99bp
4622 O_BomoASG14160_5prime_partial:A_BomoASG_c28525_g1_i1
347bp
 U7_snRNA-associated_Sm-like_protein_LSm11_isoform_X1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0030529 C ribonucleoprotein complex
4623 O_BomoASG14161_complete:A_BomoASG_c28525_g1_i1
316bp
4624 O_BomoASG14162_5prime_partial:A_BomoASG_c28527_g1_i1
112bp
 caspase_Nc_[Bombyx_mori]
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0004175 F endopeptidase activity
GO:0004197 F cysteine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006508 P proteolysis
GO:0006915 P apoptotic process
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0007291 P sperm individualization
GO:0007417 P central nervous system development
GO:0007423 P sensory organ development
GO:0007516 P hemocyte development
GO:0007552 P metamorphosis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008258 P head involution
GO:0008285 P negative regulation of cell population proliferation
GO:0008340 P determination of adult lifespan
GO:0010506 P regulation of autophagy
GO:0010623 P programmed cell death involved in cell development
GO:0010941 P regulation of cell death
GO:0012501 P programmed cell death
GO:0016322 P neuron remodeling
GO:0016540 P protein autoprocessing
GO:0016787 F hydrolase activity
GO:0031638 P zymogen activation
GO:0035006 P melanization defense response
GO:0035070 P salivary gland histolysis
GO:0035071 P salivary gland cell autophagic cell death
GO:0035234 P ectopic germ cell programmed cell death
GO:0042803 F protein homodimerization activity
GO:0043293 C apoptosome
GO:0045476 P nurse cell apoptotic process
GO:0046668 P regulation of retinal cell programmed cell death
GO:0046672 P positive regulation of compound eye retinal cell programmed cell death
GO:0048102 P autophagic cell death
GO:0048749 P compound eye development
GO:0048813 P dendrite morphogenesis
GO:0050700 F CARD domain binding
GO:0051291 P protein heterooligomerization
GO:0097190 P apoptotic signaling pathway
GO:0097199 F cysteine-type endopeptidase activity involved in apoptotic signaling pathway
GO:2001269 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway
4625 O_BomoASG14163_complete:A_BomoASG_c28528_g1_i2
285bp
 non-structural_maintenance_of_chromosomes_element_1_homolog_isoform_X1_[Bombyx_mori]
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006301 P postreplication repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030915 C Smc5-Smc6 complex
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
GO:2001022 P positive regulation of response to DNA damage stimulus
4626 O_BomoASG14164_complete:A_BomoASG_c28528_g1_i3
183bp
 non-structural_maintenance_of_chromosomes_element_1_homolog_isoform_X1_[Bombyx_mori]
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006301 P postreplication repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030915 C Smc5-Smc6 complex
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
GO:2001022 P positive regulation of response to DNA damage stimulus
4627 O_BomoASG14165_5prime_partial:A_BomoASG_c28531_g1_i1
606bp
 sphingosine_kinase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001568 P blood vessel development
GO:0003376 P sphingosine-1-phosphate receptor signaling pathway
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005829 C cytosol
GO:0006669 P sphinganine-1-phosphate biosynthetic process
GO:0006670 P sphingosine metabolic process
GO:0007420 P brain development
GO:0007565 P female pregnancy
GO:0008283 P cell population proliferation
GO:0008284 P positive regulation of cell population proliferation
GO:0008481 F sphinganine kinase activity
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0017050 F D-erythro-sphingosine kinase activity
GO:0038036 F sphingosine-1-phosphate receptor activity
GO:0043066 P negative regulation of apoptotic process
GO:0046512 P sphingosine biosynthetic process
GO:0046834 P lipid phosphorylation
4628 O_BomoASG14166_complete:A_BomoASG_c28531_g1_i1
127bp
4629 O_BomoASG14167_complete:A_BomoASG_c28532_g1_i2
186bp
 putative_glutathione-specific_gamma-glutamylcyclotransferase_2_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
4630 O_BomoASG14168_3prime_partial:A_BomoASG_c28533_g1_i1
153bp
4631 O_BomoASG14169_internal:A_BomoASG_c28534_g2_i1
108bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC110386319,_partial_[Bombyx_mori]
4632 O_BomoASG1416_complete:A_BomoASG_c8758_g1_i1
514bp
 serine_protease_inhibitor_10_precursor_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
4633 O_BomoASG14170_complete:A_BomoASG_c28535_g1_i2
162bp
 geminin-like_[Bombyx_mori]
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006275 P regulation of DNA replication
GO:0006461 P protein-containing complex assembly
GO:0007049 P cell cycle
GO:0008156 P negative regulation of DNA replication
GO:0009887 P animal organ morphogenesis
GO:0042826 F histone deacetylase binding
GO:0045786 P negative regulation of cell cycle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0070491 F DNA-binding transcription factor binding
4634 O_BomoASG14171_complete:A_BomoASG_c28536_g1_i1
206bp
 rRNA-processing_protein_FCF1_homolog_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
4635 O_BomoASG14172_3prime_partial:A_BomoASG_c28537_g1_i2
402bp
 otoferlin-like_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005509 F calcium ion binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007605 P sensory perception of sound
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0016323 C basolateral plasma membrane
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032403 F protein-containing complex binding
GO:0045177 C apical part of cell
GO:0045178 C basal part of cell
GO:0045202 C synapse
GO:0061025 P membrane fusion
GO:0090102 P cochlea development
4636 O_BomoASG14173_complete:A_BomoASG_c28540_g1_i1
405bp
 mannose-6-phosphate_isomerase_[Bombyx_mori]
GO:0004476 F mannose-6-phosphate isomerase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0008270 F zinc ion binding
GO:0009298 P GDP-mannose biosynthetic process
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
GO:0061611 P mannose to fructose-6-phosphate metabolic process
GO:0070062 C extracellular exosome
4637 O_BomoASG14174_3prime_partial:A_BomoASG_c28541_g1_i1
976bp
 titin_isoform_X2_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016604 C nuclear body
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0042826 F histone deacetylase binding
GO:0044255 P cellular lipid metabolic process
GO:0047485 F protein N-terminus binding
GO:0072365 P obsolete regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
4638 O_BomoASG14175_complete:A_BomoASG_c28541_g1_i1
157bp
4639 O_BomoASG14176_complete:A_BomoASG_c28541_g1_i1
143bp
4640 O_BomoASG14177_complete:A_BomoASG_c28541_g1_i1
123bp
4641 O_BomoASG14178_3prime_partial:A_BomoASG_c28541_g1_i2
976bp
 titin_isoform_X2_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016604 C nuclear body
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0042826 F histone deacetylase binding
GO:0044255 P cellular lipid metabolic process
GO:0047485 F protein N-terminus binding
GO:0072365 P obsolete regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
4642 O_BomoASG14179_complete:A_BomoASG_c28541_g1_i2
157bp
4643 O_BomoASG1417_internal:A_BomoASG_c8799_g1_i1
137bp
 PREDICTED:_WD_repeat-containing_protein_6_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0007049 P cell cycle
4644 O_BomoASG14180_complete:A_BomoASG_c28541_g1_i2
143bp
4645 O_BomoASG14181_complete:A_BomoASG_c28541_g1_i2
123bp
4646 O_BomoASG14182_5prime_partial:A_BomoASG_c28541_g1_i2
104bp
4647 O_BomoASG14183_3prime_partial:A_BomoASG_c28541_g1_i3
980bp
 titin_isoform_X1_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016604 C nuclear body
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0042826 F histone deacetylase binding
GO:0044255 P cellular lipid metabolic process
GO:0047485 F protein N-terminus binding
GO:0072365 P obsolete regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
4648 O_BomoASG14184_complete:A_BomoASG_c28541_g1_i3
157bp
4649 O_BomoASG14185_complete:A_BomoASG_c28541_g1_i3
123bp
4650 O_BomoASG14186_internal:A_BomoASG_c28541_g1_i4
690bp
 titin_isoform_X2_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0002155 P regulation of thyroid hormone mediated signaling pathway
GO:0002361 P CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005876 C spindle microtubule
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007623 P circadian rhythm
GO:0014067 P negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016568 P chromatin organization
GO:0016580 C Sin3 complex
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0019904 F protein domain specific binding
GO:0021794 P thalamus development
GO:0031065 P positive regulation of histone deacetylation
GO:0032922 P circadian regulation of gene expression
GO:0035033 F histone deacetylase regulator activity
GO:0035257 F nuclear receptor binding
GO:0040014 P regulation of multicellular organism growth
GO:0042632 P cholesterol homeostasis
GO:0042826 F histone deacetylase binding
GO:0042974 F retinoic acid receptor binding
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046329 P negative regulation of JNK cascade
GO:0046965 F retinoid X receptor binding
GO:0046966 F thyroid hormone receptor binding
GO:0051225 P spindle assembly
GO:0060318 P definitive erythrocyte differentiation
GO:0072362 P obsolete regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter
GO:0072368 P obsolete regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
GO:1904017 P cellular response to Thyroglobulin triiodothyronine
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