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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4531 O_BomoASG14079_complete:A_BomoASG_c28496_g1_i1
623bp
 peroxisomal_acyl-coenzyme_A_oxidase_3_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005102 F signaling receptor binding
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005782 C peroxisomal matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016402 F pristanoyl-CoA oxidase activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
4532 O_BomoASG1407_internal:A_BomoASG_c8660_g1_i1
148bp
4533 O_BomoASG14080_complete:A_BomoASG_c28496_g1_i1
134bp
4534 O_BomoASG14081_complete:A_BomoASG_c28496_g1_i1
132bp
4535 O_BomoASG14082_5prime_partial:A_BomoASG_c28496_g1_i2
123bp
 peroxisomal_acyl-coenzyme_A_oxidase_3_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005504 F fatty acid binding
GO:0005777 C peroxisome
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016402 F pristanoyl-CoA oxidase activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
4536 O_BomoASG14083_5prime_partial:A_BomoASG_c28497_g1_i1
111bp
 afadin_isoform_X5_[Bombyx_mori]
4537 O_BomoASG14084_3prime_partial:A_BomoASG_c28497_g1_i1
106bp
4538 O_BomoASG14085_5prime_partial:A_BomoASG_c28499_g1_i1
128bp
 Yokozuna_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004190 F aspartic-type endopeptidase activity
GO:0005524 F ATP binding
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
4539 O_BomoASG14086_5prime_partial:A_BomoASG_c28500_g1_i1
110bp
4540 O_BomoASG14087_complete:A_BomoASG_c28500_g1_i2
599bp
 dual_specificity_protein_kinase_TTK_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004712 F protein serine/threonine/tyrosine kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0005524 F ATP binding
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007060 P male meiosis chromosome segregation
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0009790 P embryo development
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016321 P female meiosis chromosome segregation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0031101 P fin regeneration
GO:0042246 P tissue regeneration
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051304 P chromosome separation
GO:0060249 P anatomical structure homeostasis
4541 O_BomoASG14088_complete:A_BomoASG_c28500_g1_i2
114bp
4542 O_BomoASG14089_complete:A_BomoASG_c28502_g1_i1
658bp
 RUN_and_FYVE_domain-containing_protein_2_isoform_X3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0046872 F metal ion binding
4543 O_BomoASG1408_internal:A_BomoASG_c8678_g1_i1
134bp
 oxidative_stress-induced_growth_inhibitor_1_isoform_X2_[Bombyx_mori]
4544 O_BomoASG14090_complete:A_BomoASG_c28502_g1_i1
135bp
4545 O_BomoASG14091_complete:A_BomoASG_c28502_g1_i2
161bp
 RUN_and_FYVE_domain-containing_protein_2_isoform_X5_[Bombyx_mori]
GO:0005634 C nucleus
GO:0046872 F metal ion binding
4546 O_BomoASG14092_complete:A_BomoASG_c28502_g1_i2
135bp
4547 O_BomoASG14093_complete:A_BomoASG_c28502_g1_i3
465bp
 RUN_and_FYVE_domain-containing_protein_2_isoform_X3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0046872 F metal ion binding
4548 O_BomoASG14094_complete:A_BomoASG_c28502_g1_i3
135bp
4549 O_BomoASG14095_complete:A_BomoASG_c28503_g1_i1
203bp
 U2_small_nuclear_ribonucleoprotein_auxiliary_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030628 F pre-mRNA 3'-splice site binding
GO:0046833 P positive regulation of RNA export from nucleus
GO:0046982 F protein heterodimerization activity
GO:0051168 P nuclear export
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
4550 O_BomoASG14096_complete:A_BomoASG_c28503_g1_i1
120bp
4551 O_BomoASG14097_3prime_partial:A_BomoASG_c28503_g2_i1
293bp
 U2_small_nuclear_ribonucleoprotein_auxiliary_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030628 F pre-mRNA 3'-splice site binding
GO:0046833 P positive regulation of RNA export from nucleus
GO:0046982 F protein heterodimerization activity
GO:0051168 P nuclear export
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
4552 O_BomoASG14098_complete:A_BomoASG_c28503_g1_i2
195bp
 U2_small_nuclear_ribonucleoprotein_auxiliary_factor_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030628 F pre-mRNA 3'-splice site binding
GO:0046833 P positive regulation of RNA export from nucleus
GO:0046982 F protein heterodimerization activity
GO:0051168 P nuclear export
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
4553 O_BomoASG14099_complete:A_BomoASG_c28503_g1_i2
120bp
4554 O_BomoASG1409_3prime_partial:A_BomoASG_c8678_g1_i1
101bp
4555 O_BomoASG140_internal:A_BomoASG_c1090_g1_i1
226bp
 Fanconi_anemia_group_M_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000712 P resolution of meiotic recombination intermediates
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0031297 P replication fork processing
GO:0036297 P interstrand cross-link repair
GO:0043240 C Fanconi anaemia nuclear complex
GO:0071821 C FANCM-MHF complex
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4556 O_BomoASG14100_internal:A_BomoASG_c28504_g1_i1
362bp
 kal-1_protein_isoform_X1_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
4557 O_BomoASG14101_3prime_partial:A_BomoASG_c28505_g1_i1
201bp
 PREDICTED:_uncharacterized_protein_LOC106138993_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004533 F exoribonuclease H activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016032 P viral process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0019028 C viral capsid
GO:0019076 P viral release from host cell
GO:0039660 F structural constituent of virion
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
4558 O_BomoASG14102_3prime_partial:A_BomoASG_c28505_g1_i3
201bp
 PREDICTED:_uncharacterized_protein_LOC106138993_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004533 F exoribonuclease H activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016032 P viral process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0019028 C viral capsid
GO:0019076 P viral release from host cell
GO:0039660 F structural constituent of virion
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
4559 O_BomoASG14103_internal:A_BomoASG_c28505_g1_i4
199bp
 PREDICTED:_uncharacterized_protein_LOC106138993_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004533 F exoribonuclease H activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016032 P viral process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0019028 C viral capsid
GO:0019076 P viral release from host cell
GO:0039660 F structural constituent of virion
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
4560 O_BomoASG14104_3prime_partial:A_BomoASG_c28506_g1_i1
432bp
 type_I_inositol_3,4-bisphosphate_4-phosphatase_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0008152 P metabolic process
GO:0016311 P dephosphorylation
GO:0016316 F phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity
GO:0016787 F hydrolase activity
GO:0034597 F phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity
GO:0036092 P phosphatidylinositol-3-phosphate biosynthetic process
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