SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4411 O_BomoASG13971_5prime_partial:A_BomoASG_c28452_g2_i1
116bp
 inositol_hexakisphosphate_kinase_2_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000827 F inositol-1,3,4,5,6-pentakisphosphate kinase activity
GO:0000828 F inositol hexakisphosphate kinase activity
GO:0000829 F inositol heptakisphosphate kinase activity
GO:0000831 F inositol hexakisphosphate 6-kinase activity
GO:0000832 F inositol hexakisphosphate 5-kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006468 P protein phosphorylation
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032958 P inositol phosphate biosynthetic process
GO:0043647 P inositol phosphate metabolic process
GO:0046488 P phosphatidylinositol metabolic process
GO:0052723 F inositol hexakisphosphate 1-kinase activity
GO:0052724 F inositol hexakisphosphate 3-kinase activity
GO:0052836 F inositol 5-diphosphate pentakisphosphate 5-kinase activity
GO:0052839 F inositol diphosphate tetrakisphosphate kinase activity
4412 O_BomoASG13972_internal:A_BomoASG_c28453_g1_i1
120bp
 gag-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
4413 O_BomoASG13973_internal:A_BomoASG_c28454_g1_i1
347bp
 ribonuclease_H1_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005737 C cytoplasm
GO:0006401 P RNA catabolic process
GO:0016787 F hydrolase activity
GO:0043137 P DNA replication, removal of RNA primer
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
4414 O_BomoASG13974_5prime_partial:A_BomoASG_c28456_g1_i1
597bp
 phosphatidylinositol_4-phosphate_3-kinase_C2_domain-containing_subunit_alpha_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006887 P exocytosis
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0031982 C vesicle
GO:0035005 F 1-phosphatidylinositol-4-phosphate 3-kinase activity
GO:0035091 F phosphatidylinositol binding
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0048015 P phosphatidylinositol-mediated signaling
4415 O_BomoASG13975_complete:A_BomoASG_c28456_g1_i1
210bp
4416 O_BomoASG13976_complete:A_BomoASG_c28456_g1_i1
152bp
 U2_snRNP-associated_SURP_motif-containing_protein_[Trichinella_pseudospiralis]
4417 O_BomoASG13977_complete:A_BomoASG_c28458_g1_i1
595bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X4_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
4418 O_BomoASG13978_5prime_partial:A_BomoASG_c28458_g1_i1
317bp
 PREDICTED:_uncharacterized_protein_LOC105389752_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
4419 O_BomoASG13979_5prime_partial:A_BomoASG_c28458_g1_i2
245bp
 PREDICTED:_uncharacterized_protein_LOC105389752_[Plutella_xylostella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
4420 O_BomoASG1397_internal:A_BomoASG_c8614_g1_i1
106bp
 neurotactin_isoform_X2_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007158 P neuron cell-cell adhesion
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007413 P axonal fasciculation
GO:0007416 P synapse assembly
GO:0007417 P central nervous system development
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0042043 F neurexin family protein binding
GO:0045202 C synapse
GO:0050804 P modulation of chemical synaptic transmission
GO:0052689 F carboxylic ester hydrolase activity
4421 O_BomoASG13980_3prime_partial:A_BomoASG_c28459_g1_i1
305bp
 E3_ubiquitin-protein_ligase_RNF19B_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0044194 C cytolytic granule
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
4422 O_BomoASG13981_5prime_partial:A_BomoASG_c28459_g1_i1
145bp
4423 O_BomoASG13982_3prime_partial:A_BomoASG_c28460_g1_i1
277bp
 uncharacterized_protein_LOC105842708_[Bombyx_mori]
4424 O_BomoASG13983_internal:A_BomoASG_c28460_g1_i2
176bp
 uncharacterized_protein_LOC101740706,_partial_[Bombyx_mori]
4425 O_BomoASG13984_internal:A_BomoASG_c28461_g1_i1
436bp
 LOW_QUALITY_PROTEIN:_RING_finger_protein_unkempt_[Bombyx_mori]
GO:0002164 P larval development
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0008270 F zinc ion binding
GO:0008407 P chaeta morphogenesis
GO:0030182 P neuron differentiation
GO:0046872 F metal ion binding
GO:0048749 P compound eye development
GO:0050767 P regulation of neurogenesis
4426 O_BomoASG13985_3prime_partial:A_BomoASG_c28461_g1_i1
237bp
4427 O_BomoASG13986_5prime_partial:A_BomoASG_c28461_g1_i1
199bp
4428 O_BomoASG13987_5prime_partial:A_BomoASG_c28461_g1_i1
196bp
4429 O_BomoASG13988_3prime_partial:A_BomoASG_c28461_g1_i2
470bp
 LOW_QUALITY_PROTEIN:_RING_finger_protein_unkempt_[Bombyx_mori]
GO:0002164 P larval development
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0008270 F zinc ion binding
GO:0008407 P chaeta morphogenesis
GO:0030182 P neuron differentiation
GO:0046872 F metal ion binding
GO:0048749 P compound eye development
GO:0050767 P regulation of neurogenesis
4430 O_BomoASG13989_3prime_partial:A_BomoASG_c28461_g1_i2
237bp
4431 O_BomoASG1398_complete:A_BomoASG_c8616_g1_i1
148bp
 ubiquitin-conjugating_enzyme_E2-17_kDa_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0001745 P compound eye morphogenesis
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005875 C microtubule associated complex
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007140 P male meiotic nuclear division
GO:0007286 P spermatid development
GO:0008054 P anaphase-promoting complex-dependent catabolic process
GO:0016322 P neuron remodeling
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0022008 P neurogenesis
GO:0030718 P germ-line stem cell population maintenance
GO:0031625 F ubiquitin protein ligase binding
GO:0031647 P regulation of protein stability
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045676 P regulation of R7 cell differentiation
GO:0048132 P female germ-line stem cell asymmetric division
GO:0048477 P oogenesis
GO:0051276 P chromosome organization
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
4432 O_BomoASG13990_5prime_partial:A_BomoASG_c28461_g1_i2
196bp
4433 O_BomoASG13991_complete:A_BomoASG_c28461_g1_i2
110bp
4434 O_BomoASG13992_complete:A_BomoASG_c28462_g1_i1
306bp
 double-time_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0006897 P endocytosis
GO:0008360 P regulation of cell shape
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0048511 P rhythmic process
4435 O_BomoASG13993_complete:A_BomoASG_c28462_g1_i2
342bp
 double-time_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0006897 P endocytosis
GO:0008360 P regulation of cell shape
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0048511 P rhythmic process
4436 O_BomoASG13994_complete:A_BomoASG_c28462_g1_i2
116bp
4437 O_BomoASG13995_internal:A_BomoASG_c28464_g2_i1
193bp
 protein_groucho_isoform_X8_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001106 F transcription corepressor activity
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007541 P sex determination, primary response to X:A ratio
GO:0008134 F transcription factor binding
GO:0016055 P Wnt signaling pathway
GO:0030154 P cell differentiation
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0043234 C protein-containing complex
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046331 P lateral inhibition
GO:0048813 P dendrite morphogenesis
GO:0070491 F DNA-binding transcription factor binding
GO:0071837 F HMG box domain binding
GO:0071906 F CRD domain binding
GO:0090090 P negative regulation of canonical Wnt signaling pathway
4438 O_BomoASG13996_5prime_partial:A_BomoASG_c28464_g2_i1
106bp
 PREDICTED:_uncharacterized_protein_LOC107325617_isoform_X5_[Coturnix_japonica]
4439 O_BomoASG13997_5prime_partial:A_BomoASG_c28464_g1_i3
100bp
 protein_groucho_isoform_X8_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001106 F transcription corepressor activity
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007541 P sex determination, primary response to X:A ratio
GO:0008134 F transcription factor binding
GO:0016055 P Wnt signaling pathway
GO:0030154 P cell differentiation
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0043234 C protein-containing complex
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046331 P lateral inhibition
GO:0048813 P dendrite morphogenesis
GO:0070491 F DNA-binding transcription factor binding
GO:0071837 F HMG box domain binding
GO:0071906 F CRD domain binding
GO:0090090 P negative regulation of canonical Wnt signaling pathway
4440 O_BomoASG13998_3prime_partial:A_BomoASG_c28465_g1_i2
523bp
 huntingtin_[Bombyx_mori]
GO:0000132 P establishment of mitotic spindle orientation
GO:0002039 F p53 binding
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005522 F profilin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005814 C centriole
GO:0005829 C cytosol
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006915 P apoptotic process
GO:0007030 P Golgi organization
GO:0007417 P central nervous system development
GO:0008134 F transcription factor binding
GO:0014069 C postsynaptic density
GO:0030136 C clathrin-coated vesicle
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030659 C cytoplasmic vesicle membrane
GO:0031587 P positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0034452 F dynactin binding
GO:0042297 P vocal learning
GO:0042802 F identical protein binding
GO:0043025 C neuronal cell body
GO:0043234 C protein-containing complex
GO:0044325 F transmembrane transporter binding
GO:0045505 F dynein intermediate chain binding
GO:0045724 P positive regulation of cilium assembly
GO:0047496 P vesicle transport along microtubule
GO:0048487 F beta-tubulin binding
GO:0048513 P animal organ development
GO:0051028 P mRNA transport
GO:0071598 C neuronal ribonucleoprotein granule
GO:2000117 P negative regulation of cysteine-type endopeptidase activity
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
previous next from show/32479

- SilkBase 1999-2023 -