SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4261 O_BomoASG13836_internal:A_BomoASG_c28402_g2_i2
159bp
 poly(U)-binding-splicing_factor_half_pint_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001558 P regulation of cell growth
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0007282 P cystoblast division
GO:0008266 F poly(U) RNA binding
GO:0008380 P RNA splicing
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0043234 C protein-containing complex
GO:0048477 P oogenesis
GO:0051726 P regulation of cell cycle
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
4262 O_BomoASG13837_5prime_partial:A_BomoASG_c28402_g2_i2
152bp
4263 O_BomoASG13838_complete:A_BomoASG_c28403_g1_i1
259bp
 E2F_transcription_factor_4-like_protein_[Bombyx_mori]
GO:0000278 P mitotic cell cycle
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030030 P cell projection organization
GO:0044458 P motile cilium assembly
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0098534 P centriole assembly
GO:1903251 P multi-ciliated epithelial cell differentiation
4264 O_BomoASG13839_complete:A_BomoASG_c28404_g1_i2
136bp
 transmembrane_protein_60_[Helicoverpa_armigera]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4265 O_BomoASG1383_internal:A_BomoASG_c8501_g1_i1
169bp
4266 O_BomoASG13840_3prime_partial:A_BomoASG_c28405_g1_i2
206bp
 uncharacterized_protein_LOC101743937_[Bombyx_mori]
4267 O_BomoASG13841_internal:A_BomoASG_c28406_g1_i1
433bp
 LOW_QUALITY_PROTEIN:_adenylate_cyclase_type_9_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004016 F adenylate cyclase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006171 P cAMP biosynthetic process
GO:0007189 P adenylate cyclase-activating G protein-coupled receptor signaling pathway
GO:0007190 P activation of adenylate cyclase activity
GO:0007193 P adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
GO:0009190 P cyclic nucleotide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016849 F phosphorus-oxygen lyase activity
GO:0019933 P cAMP-mediated signaling
GO:0030424 C axon
GO:0030425 C dendrite
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
GO:0071880 P adenylate cyclase-activating adrenergic receptor signaling pathway
4268 O_BomoASG13842_internal:A_BomoASG_c28406_g1_i2
597bp
 LOW_QUALITY_PROTEIN:_adenylate_cyclase_type_9_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004016 F adenylate cyclase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006171 P cAMP biosynthetic process
GO:0007189 P adenylate cyclase-activating G protein-coupled receptor signaling pathway
GO:0007193 P adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
GO:0009190 P cyclic nucleotide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016849 F phosphorus-oxygen lyase activity
GO:0019933 P cAMP-mediated signaling
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
GO:0071880 P adenylate cyclase-activating adrenergic receptor signaling pathway
4269 O_BomoASG13843_3prime_partial:A_BomoASG_c28407_g1_i1
210bp
 zinc_finger_protein_271_isoform_X1_[Bombyx_mori]
4270 O_BomoASG13844_3prime_partial:A_BomoASG_c28411_g1_i1
558bp
 WD_repeat-containing_protein_47_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007275 P multicellular organism development
GO:0008150 P biological_process
4271 O_BomoASG13845_complete:A_BomoASG_c28411_g1_i1
126bp
 hypothetical_protein_WN51_01244_[Melipona_quadrifasciata]
4272 O_BomoASG13846_internal:A_BomoASG_c28412_g1_i1
586bp
 spastin_isoform_X2_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007079 P mitotic chromosome movement towards spindle pole
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0008344 P adult locomotory behavior
GO:0008568 F microtubule-severing ATPase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030154 P cell differentiation
GO:0031117 P positive regulation of microtubule depolymerization
GO:0034214 P protein hexamerization
GO:0050803 P regulation of synapse structure or activity
GO:0051013 P microtubule severing
GO:0051301 P cell division
4273 O_BomoASG13847_complete:A_BomoASG_c28412_g1_i1
216bp
 AAEL000367-PA_[Aedes_aegypti]
4274 O_BomoASG13848_internal:A_BomoASG_c28412_g1_i2
138bp
 spastin-like_isoform_X3_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0000281 P mitotic cytokinesis
GO:0001578 P microtubule bundle formation
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007049 P cell cycle
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0008017 F microtubule binding
GO:0008089 P anterograde axonal transport
GO:0008152 P metabolic process
GO:0008568 F microtubule-severing ATPase activity
GO:0010458 P exit from mitosis
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0019896 P axonal transport of mitochondrion
GO:0030154 P cell differentiation
GO:0030496 C midbody
GO:0031117 P positive regulation of microtubule depolymerization
GO:0031122 P cytoplasmic microtubule organization
GO:0031410 C cytoplasmic vesicle
GO:0031468 P nuclear membrane reassembly
GO:0031965 C nuclear membrane
GO:0032467 P positive regulation of cytokinesis
GO:0032506 P cytokinetic process
GO:0034214 P protein hexamerization
GO:0043014 F alpha-tubulin binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048487 F beta-tubulin binding
GO:0051013 P microtubule severing
GO:0051228 P mitotic spindle disassembly
GO:0051260 P protein homooligomerization
GO:0051301 P cell division
GO:0070062 C extracellular exosome
GO:0090148 P membrane fission
GO:1904115 C axon cytoplasm
4275 O_BomoASG13849_3prime_partial:A_BomoASG_c28412_g1_i2
116bp
 AAEL000367-PA_[Aedes_aegypti]
4276 O_BomoASG1384_5prime_partial:A_BomoASG_c8501_g1_i1
142bp
4277 O_BomoASG13850_5prime_partial:A_BomoASG_c28412_g1_i3
439bp
 spastin_isoform_X2_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000070 P mitotic sister chromatid segregation
GO:0000166 F nucleotide binding
GO:0000226 P microtubule cytoskeleton organization
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007079 P mitotic chromosome movement towards spindle pole
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007626 P locomotory behavior
GO:0008017 F microtubule binding
GO:0008021 C synaptic vesicle
GO:0008152 P metabolic process
GO:0008344 P adult locomotory behavior
GO:0008568 F microtubule-severing ATPase activity
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0019226 P transmission of nerve impulse
GO:0019233 P sensory perception of pain
GO:0030154 P cell differentiation
GO:0031117 P positive regulation of microtubule depolymerization
GO:0031122 P cytoplasmic microtubule organization
GO:0031594 C neuromuscular junction
GO:0034214 P protein hexamerization
GO:0035099 P hemocyte migration
GO:0043014 F alpha-tubulin binding
GO:0043195 C terminal bouton
GO:0045834 P positive regulation of lipid metabolic process
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
GO:0045887 P positive regulation of synaptic assembly at neuromuscular junction
GO:0048167 P regulation of synaptic plasticity
GO:0050775 P positive regulation of dendrite morphogenesis
GO:0050803 P regulation of synapse structure or activity
GO:0051013 P microtubule severing
GO:0051301 P cell division
GO:1900074 P negative regulation of neuromuscular synaptic transmission
GO:1900075 P positive regulation of neuromuscular synaptic transmission
GO:2000331 P regulation of terminal button organization
4278 O_BomoASG13851_internal:A_BomoASG_c28414_g1_i1
503bp
 protein_vav_isoform_X2_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0007015 P actin filament organization
GO:0007155 P cell adhesion
GO:0007391 P dorsal closure
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007424 P open tracheal system development
GO:0007520 P myoblast fusion
GO:0008360 P regulation of cell shape
GO:0016477 P cell migration
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031532 P actin cytoskeleton reorganization
GO:0035011 P melanotic encapsulation of foreign target
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
GO:0072499 P photoreceptor cell axon guidance
GO:0090630 P activation of GTPase activity
4279 O_BomoASG13852_5prime_partial:A_BomoASG_c28414_g1_i1
180bp
4280 O_BomoASG13853_internal:A_BomoASG_c28415_g1_i1
135bp
 condensin-2_complex_subunit_D3_isoform_X2_[Bombyx_mori]
4281 O_BomoASG13854_internal:A_BomoASG_c28415_g1_i2
346bp
 condensin-2_complex_subunit_D3_isoform_X1_[Bombyx_mori]
GO:0000779 C condensed chromosome, centromeric region
GO:0000799 C condensin complex
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007076 P mitotic chromosome condensation
GO:0010032 P meiotic chromosome condensation
GO:0016020 C membrane
GO:0030261 P chromosome condensation
GO:0031618 C pericentric heterochromatin
GO:0035064 F methylated histone binding
GO:0051301 P cell division
GO:0051304 P chromosome separation
4282 O_BomoASG13855_5prime_partial:A_BomoASG_c28415_g1_i2
101bp
4283 O_BomoASG13856_internal:A_BomoASG_c28416_g1_i1
118bp
 uncharacterized_protein_LOC110386653_[Bombyx_mori]
4284 O_BomoASG13857_3prime_partial:A_BomoASG_c28416_g1_i2
254bp
 uncharacterized_protein_LOC110386653_[Bombyx_mori]
4285 O_BomoASG13858_3prime_partial:A_BomoASG_c28417_g1_i1
488bp
 scm-like_with_four_MBT_domains_protein_2_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0010629 P negative regulation of gene expression
GO:0016235 C aggresome
GO:0042393 F histone binding
GO:0043231 C intracellular membrane-bounded organelle
4286 O_BomoASG13859_5prime_partial:A_BomoASG_c28417_g1_i1
141bp
4287 O_BomoASG1385_internal:A_BomoASG_c8506_g1_i1
106bp
 protein_unzipped_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007413 P axonal fasciculation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
4288 O_BomoASG13860_5prime_partial:A_BomoASG_c28418_g1_i2
188bp
 group_XV_phospholipase_A2_[Bombyx_mori]
GO:0004622 F lysophospholipase activity
GO:0005543 F phospholipid binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005739 C mitochondrion
GO:0005764 C lysosome
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006650 P glycerophospholipid metabolic process
GO:0006672 P ceramide metabolic process
GO:0008374 F O-acyltransferase activity
GO:0009062 P fatty acid catabolic process
GO:0016020 C membrane
GO:0016042 P lipid catabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016787 F hydrolase activity
GO:0034638 P phosphatidylcholine catabolic process
GO:0046338 P phosphatidylethanolamine catabolic process
GO:0046470 P phosphatidylcholine metabolic process
GO:0047499 F calcium-independent phospholipase A2 activity
GO:0070062 C extracellular exosome
4289 O_BomoASG13861_5prime_partial:A_BomoASG_c28418_g1_i3
356bp
 group_XV_phospholipase_A2_[Bombyx_mori]
GO:0004622 F lysophospholipase activity
GO:0005543 F phospholipid binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005739 C mitochondrion
GO:0005764 C lysosome
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006650 P glycerophospholipid metabolic process
GO:0006672 P ceramide metabolic process
GO:0008374 F O-acyltransferase activity
GO:0009062 P fatty acid catabolic process
GO:0016020 C membrane
GO:0016042 P lipid catabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016787 F hydrolase activity
GO:0034638 P phosphatidylcholine catabolic process
GO:0046338 P phosphatidylethanolamine catabolic process
GO:0046470 P phosphatidylcholine metabolic process
GO:0047499 F calcium-independent phospholipase A2 activity
GO:0070062 C extracellular exosome
4290 O_BomoASG13862_internal:A_BomoASG_c28419_g1_i1
176bp
 organic_cation_transporter_protein-like_isoform_X3_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005277 F acetylcholine transmembrane transporter activity
GO:0005329 F dopamine:sodium symporter activity
GO:0005333 F norepinephrine:sodium symporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006836 P neurotransmitter transport
GO:0008513 F secondary active organic cation transmembrane transporter activity
GO:0015101 F organic cation transmembrane transporter activity
GO:0015651 F quaternary ammonium group transmembrane transporter activity
GO:0015695 P organic cation transport
GO:0015697 P quaternary ammonium group transport
GO:0015872 P dopamine transport
GO:0015874 P norepinephrine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0022857 F transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0072488 P ammonium transmembrane transport
GO:1901374 P acetate ester transport
previous next from show/32479

- SilkBase 1999-2023 -