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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3811 O_BomoASG13430_3prime_partial:A_BomoASG_c28206_g1_i1
433bp
 mediator_of_RNA_polymerase_II_transcription_subunit_12_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0001105 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007275 P multicellular organism development
GO:0007406 P negative regulation of neuroblast proliferation
GO:0016592 C mediator complex
GO:0022416 P chaeta development
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035072 P ecdysone-mediated induction of salivary gland cell autophagic cell death
GO:0036011 P imaginal disc-derived leg segmentation
GO:0045498 P sex comb development
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048749 P compound eye development
GO:0070847 C core mediator complex
3812 O_BomoASG13431_internal:A_BomoASG_c28206_g1_i2
372bp
 mediator_of_RNA_polymerase_II_transcription_subunit_12_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0001105 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007275 P multicellular organism development
GO:0007406 P negative regulation of neuroblast proliferation
GO:0016592 C mediator complex
GO:0022416 P chaeta development
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035072 P ecdysone-mediated induction of salivary gland cell autophagic cell death
GO:0036011 P imaginal disc-derived leg segmentation
GO:0045498 P sex comb development
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048749 P compound eye development
GO:0070847 C core mediator complex
3813 O_BomoASG13432_3prime_partial:A_BomoASG_c28208_g1_i1
298bp
 LOW_QUALITY_PROTEIN:_WD_repeat_domain-containing_protein_83_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
3814 O_BomoASG13433_complete:A_BomoASG_c28208_g1_i1
150bp
3815 O_BomoASG13434_complete:A_BomoASG_c28209_g1_i1
306bp
 protein_FAM8A1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3816 O_BomoASG13435_internal:A_BomoASG_c28210_g1_i1
312bp
 golgin-45_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005796 C Golgi lumen
GO:0006810 P transport
GO:0007030 P Golgi organization
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0019899 F enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0043001 P Golgi to plasma membrane protein transport
3817 O_BomoASG13436_5prime_partial:A_BomoASG_c28210_g1_i1
103bp
3818 O_BomoASG13437_internal:A_BomoASG_c28210_g1_i2
243bp
 golgin-45_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005796 C Golgi lumen
GO:0006810 P transport
GO:0007030 P Golgi organization
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0019899 F enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0043001 P Golgi to plasma membrane protein transport
3819 O_BomoASG13438_5prime_partial:A_BomoASG_c28210_g1_i2
103bp
3820 O_BomoASG13439_complete:A_BomoASG_c28211_g1_i1
509bp
 uncharacterized_protein_LOC101746477_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
3821 O_BomoASG1343_5prime_partial:A_BomoASG_c8121_g1_i1
116bp
 hypothetical_protein_FF38_14237_[Lucilia_cuprina]
GO:0003824 F catalytic activity
GO:0004352 F glutamate dehydrogenase (NAD+) activity
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
3822 O_BomoASG13440_5prime_partial:A_BomoASG_c28211_g1_i1
263bp
3823 O_BomoASG13441_complete:A_BomoASG_c28213_g1_i1
270bp
 rab3_GTPase-activating_protein_catalytic_subunit_isoform_X2_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0007420 P brain development
GO:0010628 P positive regulation of gene expression
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0021854 P hypothalamus development
GO:0034389 P lipid droplet organization
GO:0043010 P camera-type eye development
GO:0043087 P regulation of GTPase activity
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0060079 P excitatory postsynaptic potential
GO:0060325 P face morphogenesis
GO:0061646 P positive regulation of glutamate neurotransmitter secretion in response to membrane depolarization
GO:0070062 C extracellular exosome
GO:0071782 C endoplasmic reticulum tubular network
GO:0097051 P establishment of protein localization to endoplasmic reticulum membrane
GO:0098794 C postsynapse
GO:1903061 P positive regulation of protein lipidation
GO:1903233 P regulation of calcium ion-dependent exocytosis of neurotransmitter
GO:1903373 P positive regulation of endoplasmic reticulum tubular network organization
GO:2000786 P positive regulation of autophagosome assembly
3824 O_BomoASG13442_complete:A_BomoASG_c28213_g1_i1
234bp
3825 O_BomoASG13443_5prime_partial:A_BomoASG_c28213_g1_i2
679bp
 rab3_GTPase-activating_protein_catalytic_subunit_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0043547 P positive regulation of GTPase activity
3826 O_BomoASG13444_complete:A_BomoASG_c28213_g1_i2
234bp
3827 O_BomoASG13445_5prime_partial:A_BomoASG_c28215_g1_i1
149bp
 zinc_finger_SWIM_domain-containing_protein_8_isoform_X1_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
3828 O_BomoASG13446_5prime_partial:A_BomoASG_c28215_g1_i3
128bp
 zinc_finger_SWIM_domain-containing_protein_8_isoform_X1_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
3829 O_BomoASG13447_5prime_partial:A_BomoASG_c28216_g1_i1
205bp
 actin-related_protein_5_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0031011 C Ino80 complex
3830 O_BomoASG13448_5prime_partial:A_BomoASG_c28216_g1_i2
165bp
 actin-related_protein_5_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0031011 C Ino80 complex
GO:0070914 P UV-damage excision repair
3831 O_BomoASG13449_5prime_partial:A_BomoASG_c28219_g1_i1
422bp
 argonaute_1_[Bombyx_mori]
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000993 F RNA polymerase II complex binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005844 C polysome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010501 P RNA secondary structure unwinding
GO:0010586 P miRNA metabolic process
GO:0010628 P positive regulation of gene expression
GO:0016442 C RISC complex
GO:0030529 C ribonucleoprotein complex
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0035068 C RISC complex
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0035198 F miRNA binding
GO:0035278 P miRNA-mediated gene silencing by inhibition of translation
GO:0035280 P miRNA loading onto RISC involved in gene silencing by miRNA
GO:0044212 F transcription cis-regulatory region binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070578 C RISC-loading complex
3832 O_BomoASG1344_internal:A_BomoASG_c8126_g1_i1
102bp
 transcriptional_adapter_2B_isoform_X2_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007412 P axon target recognition
GO:0008270 F zinc ion binding
GO:0016573 P histone acetylation
GO:0035066 P positive regulation of histone acetylation
GO:0035079 P polytene chromosome puffing
GO:0035222 P wing disc pattern formation
GO:0043966 P histone H3 acetylation
GO:0046872 F metal ion binding
GO:2000331 P regulation of terminal button organization
3833 O_BomoASG13450_internal:A_BomoASG_c28222_g1_i1
450bp
 apaf-1_protein_isoform_X1_[Bombyx_mori]
3834 O_BomoASG13451_complete:A_BomoASG_c28223_g1_i2
307bp
 probable_tRNA_pseudouridine_synthase_2_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
3835 O_BomoASG13452_5prime_partial:A_BomoASG_c28224_g1_i1
213bp
 zinc_finger_and_SCAN_domain-containing_protein_12-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
3836 O_BomoASG13453_3prime_partial:A_BomoASG_c28224_g2_i1
299bp
 zinc_finger_protein_600-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3837 O_BomoASG13454_complete:A_BomoASG_c28224_g2_i1
100bp
3838 O_BomoASG13455_internal:A_BomoASG_c28224_g2_i2
175bp
 zinc_finger_protein_600-like_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3839 O_BomoASG13456_5prime_partial:A_BomoASG_c28224_g2_i2
108bp
3840 O_BomoASG13457_complete:A_BomoASG_c28225_g1_i1
407bp
 hydroxysteroid_dehydrogenase_[Bombyx_mori]
GO:0005777 C peroxisome
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
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