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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3691 O_BomoASG13322_5prime_partial:A_BomoASG_c28152_g1_i2
565bp
 bestrophin_homolog_18_isoform_X1_[Bombyx_mori]
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005929 C cilium
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0007608 P sensory perception of smell
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034707 C chloride channel complex
GO:0051899 P membrane depolarization
GO:1902476 P chloride transmembrane transport
3692 O_BomoASG13323_complete:A_BomoASG_c28152_g1_i2
116bp
3693 O_BomoASG13324_complete:A_BomoASG_c28152_g1_i3
707bp
 bestrophin-4_isoform_X2_[Bombyx_mori]
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005929 C cilium
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0007608 P sensory perception of smell
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034707 C chloride channel complex
GO:0051899 P membrane depolarization
GO:1902476 P chloride transmembrane transport
3694 O_BomoASG13325_complete:A_BomoASG_c28152_g1_i3
116bp
3695 O_BomoASG13326_internal:A_BomoASG_c28154_g1_i1
163bp
 negative_elongation_factor_B_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0017053 C transcription repressor complex
GO:0032021 C NELF complex
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
3696 O_BomoASG13327_internal:A_BomoASG_c28154_g1_i2
186bp
 negative_elongation_factor_B_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0017053 C transcription repressor complex
GO:0032021 C NELF complex
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
3697 O_BomoASG13328_internal:A_BomoASG_c28154_g1_i3
375bp
 negative_elongation_factor_B_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0017053 C transcription repressor complex
GO:0032021 C NELF complex
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
3698 O_BomoASG13329_5prime_partial:A_BomoASG_c28156_g1_i1
293bp
 transmembrane_protein_19_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3699 O_BomoASG1332_internal:A_BomoASG_c8057_g1_i1
131bp
 uncharacterized_protein_LOC105842629_[Bombyx_mori]
3700 O_BomoASG13330_complete:A_BomoASG_c28156_g1_i2
342bp
 transmembrane_protein_19_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3701 O_BomoASG13331_complete:A_BomoASG_c28156_g1_i4
342bp
 transmembrane_protein_19_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3702 O_BomoASG13332_complete:A_BomoASG_c28157_g1_i1
127bp
 uncharacterized_protein_LOC778505_[Bombyx_mori]
3703 O_BomoASG13333_complete:A_BomoASG_c28160_g1_i1
309bp
 mRNA_transport_regulator_3_isoform_X2_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0016075 P rRNA catabolic process
GO:0031125 P rRNA 3'-end processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0071028 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
3704 O_BomoASG13334_complete:A_BomoASG_c28163_g2_i1
373bp
 segmentation_polarity_homeobox_protein_engrailed-like_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007367 P segment polarity determination
GO:0043565 F sequence-specific DNA binding
3705 O_BomoASG13335_complete:A_BomoASG_c28163_g1_i2
478bp
 homeobox_protein_invected_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0043565 F sequence-specific DNA binding
3706 O_BomoASG13336_complete:A_BomoASG_c28163_g1_i2
199bp
 homeo_box_gene_48A_anti
3707 O_BomoASG13337_complete:A_BomoASG_c28163_g1_i3
478bp
 homeobox_protein_invected_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0043565 F sequence-specific DNA binding
3708 O_BomoASG13338_complete:A_BomoASG_c28163_g1_i3
199bp
 homeo_box_gene_48A_anti
3709 O_BomoASG13339_5prime_partial:A_BomoASG_c28165_g1_i1
286bp
3710 O_BomoASG1333_5prime_partial:A_BomoASG_c8057_g1_i1
116bp
3711 O_BomoASG13340_5prime_partial:A_BomoASG_c28165_g1_i1
265bp
 uncharacterized_protein_LOC101741752_isoform_X5_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3712 O_BomoASG13341_5prime_partial:A_BomoASG_c28165_g1_i2
157bp
 uncharacterized_protein_LOC101741752_isoform_X5_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3713 O_BomoASG13342_3prime_partial:A_BomoASG_c28165_g1_i2
134bp
3714 O_BomoASG13343_3prime_partial:A_BomoASG_c28165_g1_i3
102bp
3715 O_BomoASG13344_5prime_partial:A_BomoASG_c28165_g1_i4
150bp
 zinc_finger_protein_845_isoform_X4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3716 O_BomoASG13345_complete:A_BomoASG_c28165_g1_i4
143bp
3717 O_BomoASG13346_internal:A_BomoASG_c28169_g1_i1
250bp
 PAX3-_and_PAX7-binding_protein_1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0014842 P regulation of skeletal muscle satellite cell proliferation
GO:0031062 P positive regulation of histone methylation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:2000288 P positive regulation of myoblast proliferation
3718 O_BomoASG13347_5prime_partial:A_BomoASG_c28169_g1_i1
148bp
3719 O_BomoASG13348_internal:A_BomoASG_c28170_g1_i1
414bp
3720 O_BomoASG13349_5prime_partial:A_BomoASG_c28170_g1_i1
409bp
 E3_ubiquitin-protein_ligase_RFWD2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
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