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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3661 O_BomoASG13296_complete:A_BomoASG_c28137_g1_i2
275bp
 uncharacterized_protein_LOC105841501_[Bombyx_mori]
3662 O_BomoASG13297_5prime_partial:A_BomoASG_c28137_g1_i2
124bp
3663 O_BomoASG13298_complete:A_BomoASG_c28138_g1_i1
192bp
 28S_ribosomal_protein_S11,_mitochondrial_[Bombyx_mori]
GO:0000028 P ribosomal small subunit assembly
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0042769 P obsolete DNA damage response, detection of DNA damage
GO:0044822 F RNA binding
GO:0048027 F mRNA 5'-UTR binding
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
GO:0070181 F small ribosomal subunit rRNA binding
3664 O_BomoASG13299_5prime_partial:A_BomoASG_c28139_g1_i1
102bp
3665 O_BomoASG1329_internal:A_BomoASG_c8042_g1_i1
277bp
 synaptic_vesicle_glycoprotein_2C_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005351 F carbohydrate:proton symporter activity
GO:0005355 F glucose transmembrane transporter activity
GO:0005783 C endoplasmic reticulum
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0009414 P response to water deprivation
GO:0009651 P response to salt stress
GO:0009737 P response to abscisic acid
GO:0010200 P response to chitin
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0035428 P hexose transmembrane transport
GO:0046323 P glucose import
GO:0051119 F sugar transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:1904659 P glucose transmembrane transport
3666 O_BomoASG132_internal:A_BomoASG_c903_g1_i1
255bp
 LOW_QUALITY_PROTEIN:_ankyrin_repeat_domain-containing_protein_50_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:1990126 P endocytic recycling
3667 O_BomoASG13300_5prime_partial:A_BomoASG_c28140_g1_i1
125bp
 hikaru_genki_[Bombyx_mori]
3668 O_BomoASG13301_internal:A_BomoASG_c28140_g1_i3
148bp
 hikaru_genki_[Bombyx_mori]
3669 O_BomoASG13302_internal:A_BomoASG_c28140_g1_i3
148bp
 reverse_transcriptase,_partial_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3670 O_BomoASG13303_internal:A_BomoASG_c28140_g1_i4
144bp
 hikaru_genki_[Bombyx_mori]
3671 O_BomoASG13304_5prime_partial:A_BomoASG_c28140_g1_i4
114bp
 reverse_transcriptase,_partial_[Bombyx_mori]
3672 O_BomoASG13305_5prime_partial:A_BomoASG_c28140_g1_i5
139bp
 hikaru_genki_[Bombyx_mori]
3673 O_BomoASG13306_5prime_partial:A_BomoASG_c28141_g1_i1
123bp
3674 O_BomoASG13307_complete:A_BomoASG_c28142_g1_i1
810bp
 hillarin_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006508 P proteolysis
GO:0007517 P muscle organ development
GO:0007528 P neuromuscular junction development
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
GO:0030018 C Z disc
3675 O_BomoASG13308_complete:A_BomoASG_c28142_g1_i1
140bp
3676 O_BomoASG13309_complete:A_BomoASG_c28142_g1_i2
810bp
 hillarin_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006508 P proteolysis
GO:0007517 P muscle organ development
GO:0007528 P neuromuscular junction development
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
GO:0030018 C Z disc
3677 O_BomoASG1330_complete:A_BomoASG_c8042_g1_i1
106bp
3678 O_BomoASG13310_complete:A_BomoASG_c28142_g1_i2
140bp
3679 O_BomoASG13311_internal:A_BomoASG_c28143_g1_i1
510bp
 uncharacterized_protein_LOC101742695_[Bombyx_mori]
3680 O_BomoASG13312_complete:A_BomoASG_c28146_g1_i1
238bp
 uncharacterized_protein_LOC101738001_[Bombyx_mori]
3681 O_BomoASG13313_complete:A_BomoASG_c28146_g1_i2
357bp
 uncharacterized_protein_LOC101738001_[Bombyx_mori]
3682 O_BomoASG13314_internal:A_BomoASG_c28148_g1_i1
551bp
 AT-rich_interactive_domain-containing_protein_5B_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0044212 F transcription cis-regulatory region binding
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060612 P adipose tissue development
3683 O_BomoASG13315_5prime_partial:A_BomoASG_c28148_g1_i1
220bp
3684 O_BomoASG13316_complete:A_BomoASG_c28149_g1_i1
140bp
 39S_ribosomal_protein_L3,_mitochondrial_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
3685 O_BomoASG13317_complete:A_BomoASG_c28149_g1_i2
226bp
 39S_ribosomal_protein_L3,_mitochondrial_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
3686 O_BomoASG13318_complete:A_BomoASG_c28149_g1_i3
365bp
 39S_ribosomal_protein_L3,_mitochondrial_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
3687 O_BomoASG13319_complete:A_BomoASG_c28150_g1_i1
1031bp
 superkiller_viralicidic_activity_2-like_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000178 C exosome (RNase complex)
GO:0000398 P mRNA splicing, via spliceosome
GO:0000460 P maturation of 5.8S rRNA
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
3688 O_BomoASG1331_complete:A_BomoASG_c8045_g1_i1
397bp
 26S_proteasome_regulatory_ATPase_subunit_10B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000502 C proteasome complex
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008540 C proteasome regulatory particle, base subcomplex
GO:0016020 C membrane
GO:0016234 C inclusion body
GO:0016787 F hydrolase activity
GO:0017025 F TBP-class protein binding
GO:0022624 C proteasome accessory complex
GO:0030163 P protein catabolic process
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0031595 C nuclear proteasome complex
GO:0031597 C cytosolic proteasome complex
GO:0036402 F proteasome-activating activity
GO:0045899 P positive regulation of RNA polymerase II transcription preinitiation complex assembly
GO:0070062 C extracellular exosome
GO:0090261 P positive regulation of inclusion body assembly
GO:1901800 P positive regulation of proteasomal protein catabolic process
3689 O_BomoASG13320_complete:A_BomoASG_c28152_g1_i1
716bp
 bestrophin_homolog_18_isoform_X1_[Bombyx_mori]
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005929 C cilium
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0007608 P sensory perception of smell
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034707 C chloride channel complex
GO:0051899 P membrane depolarization
GO:1902476 P chloride transmembrane transport
3690 O_BomoASG13321_complete:A_BomoASG_c28152_g1_i1
116bp
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