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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3331 O_BomoASG1299_complete:A_BomoASG_c7780_g1_i2
424bp
 kynurenine--oxoglutarate_transaminase_3_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005739 C mitochondrion
GO:0006103 P 2-oxoglutarate metabolic process
GO:0006520 P cellular amino acid metabolic process
GO:0008483 F transaminase activity
GO:0009058 P biosynthetic process
GO:0016212 F kynurenine-oxoglutarate transaminase activity
GO:0016740 F transferase activity
GO:0016829 F lyase activity
GO:0030170 F pyridoxal phosphate binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0047315 F kynurenine-glyoxylate transaminase activity
GO:0047804 F cysteine-S-conjugate beta-lyase activity
GO:0070189 P kynurenine metabolic process
GO:0097052 P L-kynurenine metabolic process
3332 O_BomoASG129_5prime_partial:A_BomoASG_c874_g1_i1
115bp
3333 O_BomoASG12_internal:A_BomoASG_c107_g1_i1
106bp
3334 O_BomoASG13000_5prime_partial:A_BomoASG_c27993_g5_i1
293bp
 nuclear_pore_glycoprotein_p62_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0003682 F chromatin binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005642 C annulate lamellae
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0007067 P mitotic cell cycle
GO:0007077 P mitotic nuclear membrane disassembly
GO:0007166 P cell surface receptor signaling pathway
GO:0007283 P spermatogenesis
GO:0007569 P cell aging
GO:0008219 P cell death
GO:0008285 P negative regulation of cell population proliferation
GO:0009755 P hormone-mediated signaling pathway
GO:0009966 P regulation of signal transduction
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0019894 F kinesin binding
GO:0030159 F signaling receptor complex adaptor activity
GO:0030529 C ribonucleoprotein complex
GO:0030544 F Hsp70 protein binding
GO:0031047 P gene silencing by RNA
GO:0031074 C nucleocytoplasmic transport complex
GO:0031965 C nuclear membrane
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042169 F SH2 domain binding
GO:0042306 P regulation of protein import into nucleus
GO:0043066 P negative regulation of apoptotic process
GO:0043069 P negative regulation of programmed cell death
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 F ubiquitin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0043407 P negative regulation of MAP kinase activity
GO:0044613 C nuclear pore central transport channel
GO:0045742 P positive regulation of epidermal growth factor receptor signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046578 P regulation of Ras protein signal transduction
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0046930 C pore complex
GO:0046966 F thyroid hormone receptor binding
GO:0051028 P mRNA transport
GO:0051169 P nuclear transport
GO:0051425 F PTB domain binding
GO:0051879 F Hsp90 protein binding
GO:0070208 P protein heterotrimerization
GO:0071426 P obsolete ribonucleoprotein complex export from nucleus
GO:0075733 P intracellular transport of virus
GO:0090543 C Flemming body
GO:1900034 P regulation of cellular response to heat
3335 O_BomoASG13001_3prime_partial:A_BomoASG_c27993_g6_i1
510bp
 nuclear_pore_glycoprotein_p62_[Bombyx_mori]
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0002039 F p53 binding
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0006978 P DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0010944 P negative regulation of transcription by competitive promoter binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016266 P O-glycan processing
GO:0016324 C apical plasma membrane
GO:0031982 C vesicle
GO:0033629 P negative regulation of cell adhesion mediated by integrin
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043618 P regulation of transcription from RNA polymerase II promoter in response to stress
GO:0070062 C extracellular exosome
GO:0090240 P positive regulation of histone H4 acetylation
GO:1902166 P negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
3336 O_BomoASG13002_5prime_partial:A_BomoASG_c27993_g6_i1
123bp
 hypothetical_protein_[Bartonella_elizabethae]
3337 O_BomoASG13003_complete:A_BomoASG_c27993_g6_i1
121bp
3338 O_BomoASG13004_5prime_partial:A_BomoASG_c27994_g1_i1
213bp
 unconventional_myosin-Va_[Bombyx_mori]
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0003091 P renal water homeostasis
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0016459 C myosin complex
GO:0017137 F small GTPase binding
GO:0030659 C cytoplasmic vesicle membrane
GO:0032439 P endosomal transport
GO:0043234 C protein-containing complex
GO:0045179 C apical cortex
GO:0055037 C recycling endosome
GO:0070062 C extracellular exosome
3339 O_BomoASG13005_complete:A_BomoASG_c27994_g1_i1
156bp
3340 O_BomoASG13006_complete:A_BomoASG_c27994_g1_i1
111bp
3341 O_BomoASG13007_5prime_partial:A_BomoASG_c27995_g1_i1
389bp
 exopolyphosphatase_PRUNE1_isoform_X1_[Bombyx_mori]
GO:0004427 F inorganic diphosphatase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005925 C focal adhesion
GO:0008152 P metabolic process
GO:0016462 F pyrophosphatase activity
GO:0016787 F hydrolase activity
GO:0030054 C cell junction
GO:0046872 F metal ion binding
3342 O_BomoASG13008_5prime_partial:A_BomoASG_c27995_g1_i1
191bp
3343 O_BomoASG13009_5prime_partial:A_BomoASG_c27995_g1_i1
123bp
3344 O_BomoASG1300_internal:A_BomoASG_c7783_g1_i1
121bp
3345 O_BomoASG13010_3prime_partial:A_BomoASG_c27996_g1_i1
369bp
 NADPH-dependent_diflavin_oxidoreductase_1_isoform_X1_[Bombyx_mori]
GO:0003958 F NADPH-hemoprotein reductase activity
GO:0005506 F iron ion binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008219 P cell death
GO:0010181 F FMN binding
GO:0016226 P iron-sulfur cluster assembly
GO:0016491 F oxidoreductase activity
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0036245 P cellular response to menadione
GO:0048471 C perinuclear region of cytoplasm
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0055114 P obsolete oxidation-reduction process
3346 O_BomoASG13011_3prime_partial:A_BomoASG_c27999_g1_i1
872bp
 RRP12-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0048812 P neuron projection morphogenesis
3347 O_BomoASG13012_5prime_partial:A_BomoASG_c27999_g1_i1
130bp
3348 O_BomoASG13013_complete:A_BomoASG_c27999_g1_i1
113bp
3349 O_BomoASG13014_complete:A_BomoASG_c27999_g1_i1
113bp
3350 O_BomoASG13015_internal:A_BomoASG_c28003_g1_i1
552bp
 uncharacterized_protein_LOC110373622_[Helicoverpa_armigera]
3351 O_BomoASG13016_internal:A_BomoASG_c28003_g1_i2
532bp
 uncharacterized_protein_LOC110373622_[Helicoverpa_armigera]
3352 O_BomoASG13017_complete:A_BomoASG_c28004_g1_i1
176bp
 CCR4-NOT_transcription_complex_subunit_7_isoform_X2_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
3353 O_BomoASG13018_complete:A_BomoASG_c28004_g1_i2
244bp
 CCR4-NOT_transcription_complex_subunit_7_isoform_X2_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
3354 O_BomoASG13019_complete:A_BomoASG_c28004_g1_i3
201bp
 CCR4-NOT_transcription_complex_subunit_7_isoform_X2_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
3355 O_BomoASG1301_internal:A_BomoASG_c7783_g1_i1
121bp
 PREDICTED:_mitogen-activated_protein_kinase-binding_protein_1_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0007256 P obsolete activation of JNKK activity
3356 O_BomoASG13020_complete:A_BomoASG_c28006_g1_i1
389bp
 carnosine_N-methyltransferase_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0030735 F carnosine N-methyltransferase activity
GO:0032259 P methylation
GO:0035498 P carnosine metabolic process
3357 O_BomoASG13021_complete:A_BomoASG_c28006_g1_i1
124bp
3358 O_BomoASG13022_complete:A_BomoASG_c28008_g1_i1
347bp
 ADP-ribosylation_factor_GTPase-activating_protein_1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0030100 P regulation of endocytosis
GO:0036498 P IRE1-mediated unfolded protein response
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0046872 F metal ion binding
GO:0097481 C postsynaptic density
3359 O_BomoASG13023_complete:A_BomoASG_c28008_g1_i1
114bp
3360 O_BomoASG13024_3prime_partial:A_BomoASG_c28009_g1_i1
101bp
 transmembrane_and_ubiquitin-like_domain-containing_protein_1_isoform_X1_[Bombyx_mori]
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