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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2161 O_BomoASG11946_5prime_partial:A_BomoASG_c27329_g2_i2
159bp
2162 O_BomoASG11947_complete:A_BomoASG_c27329_g2_i2
129bp
2163 O_BomoASG11948_complete:A_BomoASG_c27330_g1_i1
441bp
 PREDICTED:_AP-2_complex_subunit_mu_[Amyelois_transitella]
GO:0005048 F signal sequence binding
GO:0005739 C mitochondrion
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030131 C clathrin adaptor complex
GO:0044325 F transmembrane transporter binding
GO:0070062 C extracellular exosome
GO:1903077 P negative regulation of protein localization to plasma membrane
2164 O_BomoASG11949_complete:A_BomoASG_c27330_g1_i1
220bp
2165 O_BomoASG1194_internal:A_BomoASG_c7126_g1_i1
157bp
 protein_unzipped_[Bombyx_mori]
2166 O_BomoASG11950_complete:A_BomoASG_c27330_g1_i1
142bp
 hypothetical_protein_ALC62_04899,_partial_[Cyphomyrmex_costatus]
2167 O_BomoASG11951_complete:A_BomoASG_c27333_g1_i1
128bp
2168 O_BomoASG11952_3prime_partial:A_BomoASG_c27334_g1_i1
252bp
 calcium/calmodulin-dependent_protein_kinase_kinase_2_isoform_X1_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019722 P calcium-mediated signaling
GO:0032793 P positive regulation of CREB transcription factor activity
GO:0045860 P positive regulation of protein kinase activity
GO:0046872 F metal ion binding
2169 O_BomoASG11953_5prime_partial:A_BomoASG_c27337_g1_i2
106bp
 TWiK_family_of_potassium_channels_protein_7_[Danaus_plexippus_plexippus]
2170 O_BomoASG11954_complete:A_BomoASG_c27339_g1_i1
217bp
 peptide_deformylase,_mitochondrial_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0008284 P positive regulation of cell population proliferation
GO:0016787 F hydrolase activity
GO:0018206 P peptidyl-methionine modification
GO:0031365 P N-terminal protein amino acid modification
GO:0042586 F peptide deformylase activity
GO:0046872 F metal ion binding
2171 O_BomoASG11955_5prime_partial:A_BomoASG_c27342_g1_i1
129bp
2172 O_BomoASG11956_5prime_partial:A_BomoASG_c27342_g1_i2
129bp
2173 O_BomoASG11957_5prime_partial:A_BomoASG_c27343_g1_i3
345bp
 geranylgeranyl_pyrophosphate_synthase_isoform_X1_[Bombyx_mori]
GO:0004161 F dimethylallyltranstransferase activity
GO:0004311 F farnesyltranstransferase activity
GO:0004337 F geranyltranstransferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006695 P cholesterol biosynthetic process
GO:0006720 P isoprenoid metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016740 F transferase activity
GO:0033384 P geranyl diphosphate biosynthetic process
GO:0033386 P geranylgeranyl diphosphate biosynthetic process
GO:0045337 P farnesyl diphosphate biosynthetic process
GO:0046872 F metal ion binding
2174 O_BomoASG11958_5prime_partial:A_BomoASG_c27344_g1_i1
517bp
 uncharacterized_protein_LOC101744180_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0044822 F RNA binding
2175 O_BomoASG11959_complete:A_BomoASG_c27344_g1_i1
115bp
2176 O_BomoASG1195_internal:A_BomoASG_c7129_g1_i1
105bp
 sodium-independent_sulfate_anion_transporter_isoform_X5_[Bombyx_mori]
GO:0005254 F chloride channel activity
GO:0005654 C nucleoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008271 F secondary active sulfate transmembrane transporter activity
GO:0008272 P sulfate transport
GO:0008509 F anion transmembrane transporter activity
GO:0015106 F bicarbonate transmembrane transporter activity
GO:0015116 F sulfate transmembrane transporter activity
GO:0015301 F anion:anion antiporter activity
GO:0015701 P bicarbonate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019531 F oxalate transmembrane transporter activity
GO:0019532 P oxalate transport
GO:0042391 P regulation of membrane potential
GO:0043231 C intracellular membrane-bounded organelle
GO:0051453 P regulation of intracellular pH
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
GO:1902358 P sulfate transmembrane transport
GO:1902476 P chloride transmembrane transport
2177 O_BomoASG11960_5prime_partial:A_BomoASG_c27344_g1_i2
410bp
 uncharacterized_protein_LOC101744180_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0005887 C integral component of plasma membrane
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0009986 C cell surface
GO:0010467 P gene expression
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
2178 O_BomoASG11961_complete:A_BomoASG_c27344_g1_i2
115bp
2179 O_BomoASG11962_complete:A_BomoASG_c27348_g1_i1
1219bp
 splicing_factor_3B_subunit_3_isoform_X1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0042177 P negative regulation of protein catabolic process
GO:0071013 C catalytic step 2 spliceosome
2180 O_BomoASG11963_complete:A_BomoASG_c27348_g1_i1
109bp
2181 O_BomoASG11964_complete:A_BomoASG_c27348_g1_i2
474bp
 splicing_factor_3B_subunit_3_isoform_X2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0042177 P negative regulation of protein catabolic process
GO:0071013 C catalytic step 2 spliceosome
2182 O_BomoASG11965_complete:A_BomoASG_c27348_g1_i3
630bp
 splicing_factor_3B_subunit_3_isoform_X1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
2183 O_BomoASG11966_5prime_partial:A_BomoASG_c27349_g1_i1
259bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
2184 O_BomoASG11967_complete:A_BomoASG_c27353_g1_i1
108bp
 endocuticle_structural_glycoprotein_ABD-5-like_[Helicoverpa_armigera]
GO:0042302 F structural constituent of cuticle
2185 O_BomoASG11968_complete:A_BomoASG_c27355_g4_i1
322bp
 pre-mRNA-splicing_factor_38B_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
2186 O_BomoASG11969_complete:A_BomoASG_c27355_g4_i1
138bp
2187 O_BomoASG1196_5prime_partial:A_BomoASG_c7137_g1_i1
104bp
 PREDICTED:_uncharacterized_protein_LOC106713509_[Papilio_machaon]
2188 O_BomoASG11970_complete:A_BomoASG_c27355_g4_i2
330bp
 pre-mRNA-splicing_factor_38B_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
2189 O_BomoASG11971_complete:A_BomoASG_c27355_g4_i2
146bp
2190 O_BomoASG11972_internal:A_BomoASG_c27356_g1_i1
307bp
 mitoferrin_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005381 F iron ion transmembrane transporter activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006839 P mitochondrial transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0031966 C mitochondrial membrane
GO:0034755 P iron ion transmembrane transport
GO:0048250 P iron import into the mitochondrion
GO:0048515 P spermatid differentiation
GO:0055072 P iron ion homeostasis
GO:0055085 P transmembrane transport
GO:0060586 P multicellular organismal iron ion homeostasis
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