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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1981 O_BomoASG11784_5prime_partial:A_BomoASG_c27217_g1_i1
289bp
 RNA_pseudouridylate_synthase_domain-containing_protein_1_isoform_X2_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005739 C mitochondrion
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0019239 F deaminase activity
GO:0031119 P tRNA pseudouridine synthesis
1982 O_BomoASG11785_complete:A_BomoASG_c27217_g1_i1
107bp
1983 O_BomoASG11786_5prime_partial:A_BomoASG_c27217_g1_i2
154bp
 RNA_pseudouridylate_synthase_domain-containing_protein_1_isoform_X4_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005739 C mitochondrion
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0019239 F deaminase activity
GO:0031119 P tRNA pseudouridine synthesis
1984 O_BomoASG11787_complete:A_BomoASG_c27218_g1_i1
170bp
 von_Hippel-Lindau-like_protein_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000902 P cell morphogenesis
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0019899 F enzyme binding
GO:0030891 C VCB complex
GO:0043066 P negative regulation of apoptotic process
GO:0045597 P positive regulation of cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050821 P protein stabilization
GO:0061418 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061428 P negative regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061630 F ubiquitin protein ligase activity
1985 O_BomoASG11788_internal:A_BomoASG_c27219_g1_i1
466bp
 chromosome-associated_kinesin_KIF4_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007018 P microtubule-based movement
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
1986 O_BomoASG11789_5prime_partial:A_BomoASG_c27221_g1_i1
106bp
1987 O_BomoASG1178_3prime_partial:A_BomoASG_c7004_g1_i1
180bp
 probable_proline--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004827 F proline-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006433 P prolyl-tRNA aminoacylation
GO:0016874 F ligase activity
1988 O_BomoASG11790_complete:A_BomoASG_c27222_g1_i1
158bp
 uncharacterized_protein_CG16817-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0031965 C nuclear membrane
1989 O_BomoASG11791_5prime_partial:A_BomoASG_c27223_g1_i1
102bp
1990 O_BomoASG11792_internal:A_BomoASG_c27225_g1_i1
426bp
 leucine-rich_repeat_and_calponin_homology_domain-containing_protein_3_isoform_X3_[Helicoverpa_armigera]
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
1991 O_BomoASG11793_5prime_partial:A_BomoASG_c27227_g1_i1
524bp
 CCR4-NOT_transcription_complex_subunit_6_isoform_X2_[Bombyx_mori]
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008284 P positive regulation of cell population proliferation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0035195 P gene silencing by miRNA
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0046872 F metal ion binding
GO:0070966 P nuclear-transcribed mRNA catabolic process, no-go decay
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:2000327 P obsolete positive regulation of nuclear receptor transcription coactivator activity
1992 O_BomoASG11794_5prime_partial:A_BomoASG_c27227_g1_i1
116bp
1993 O_BomoASG11795_internal:A_BomoASG_c27229_g1_i1
886bp
 paired_amphipathic_helix_protein_Sin3a_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000183 P rDNA heterochromatin assembly
GO:0000776 C kinetochore
GO:0000785 C chromatin
GO:0000976 F transcription cis-regulatory region binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001103 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001106 F transcription corepressor activity
GO:0001701 P in utero embryonic development
GO:0002218 P activation of innate immune response
GO:0002230 P positive regulation of defense response to virus by host
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006476 P protein deacetylation
GO:0007568 P aging
GO:0008134 F transcription factor binding
GO:0010243 P response to organonitrogen compound
GO:0010817 P regulation of hormone levels
GO:0010971 P positive regulation of G2/M transition of mitotic cell cycle
GO:0016575 P histone deacetylation
GO:0016580 C Sin3 complex
GO:0017053 C transcription repressor complex
GO:0031937 P obsolete positive regulation of chromatin silencing
GO:0032403 F protein-containing complex binding
GO:0033558 F protein deacetylase activity
GO:0034613 P cellular protein localization
GO:0042754 P negative regulation of circadian rhythm
GO:0043066 P negative regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043619 P regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045171 C intercellular bridge
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048511 P rhythmic process
GO:0051595 P response to methylglyoxal
GO:0071333 P cellular response to glucose stimulus
GO:1900181 P negative regulation of protein localization to nucleus
GO:1901675 P negative regulation of histone H3-K27 acetylation
GO:1903351 P cellular response to dopamine
GO:2000678 P negative regulation of transcription regulatory region DNA binding
1994 O_BomoASG11796_complete:A_BomoASG_c27229_g1_i1
108bp
1995 O_BomoASG11797_complete:A_BomoASG_c27229_g1_i1
101bp
1996 O_BomoASG11798_internal:A_BomoASG_c27231_g1_i1
303bp
 LOW_QUALITY_PROTEIN:_cytokine_receptor_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0002009 P morphogenesis of an epithelium
GO:0004888 F transmembrane signaling receptor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006955 P immune response
GO:0007259 P receptor signaling pathway via JAK-STAT
GO:0007275 P multicellular organism development
GO:0007293 P germarium-derived egg chamber formation
GO:0007298 P border follicle cell migration
GO:0007350 P blastoderm segmentation
GO:0007424 P open tracheal system development
GO:0007425 P epithelial cell fate determination, open tracheal system
GO:0007442 P hindgut morphogenesis
GO:0007616 P long-term memory
GO:0008284 P positive regulation of cell population proliferation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0016327 C apicolateral plasma membrane
GO:0019955 F cytokine binding
GO:0042981 P regulation of apoptotic process
GO:0045475 P locomotor rhythm
GO:0045824 P negative regulation of innate immune response
GO:0046982 F protein heterodimerization activity
GO:0050829 P defense response to Gram-negative bacterium
GO:0060429 P epithelium development
1997 O_BomoASG11799_internal:A_BomoASG_c27234_g1_i1
192bp
 transient_receptor_potential_cation_channel_trpm_isoform_X10_[Bombyx_mori]
1998 O_BomoASG1179_internal:A_BomoASG_c7012_g1_i1
116bp
1999 O_BomoASG117_internal:A_BomoASG_c714_g1_i1
185bp
2000 O_BomoASG11800_3prime_partial:A_BomoASG_c27234_g1_i1
151bp
2001 O_BomoASG11801_5prime_partial:A_BomoASG_c27238_g1_i1
537bp
 uncharacterized_protein_LOC101745243_[Bombyx_mori]
2002 O_BomoASG11802_3prime_partial:A_BomoASG_c27238_g1_i1
266bp
2003 O_BomoASG11803_complete:A_BomoASG_c27238_g1_i3
657bp
 uncharacterized_protein_LOC101745243_[Bombyx_mori]
2004 O_BomoASG11804_complete:A_BomoASG_c27238_g1_i3
262bp
2005 O_BomoASG11805_complete:A_BomoASG_c27238_g1_i4
101bp
 uncharacterized_protein_LOC101745243_[Bombyx_mori]
2006 O_BomoASG11806_5prime_partial:A_BomoASG_c27240_g1_i1
431bp
 facilitated_trehalose_transporter_Tret1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
2007 O_BomoASG11807_internal:A_BomoASG_c27242_g1_i1
189bp
 reverse_transcriptase_-_silkworm_transposon_Pao
2008 O_BomoASG11808_5prime_partial:A_BomoASG_c27247_g1_i1
535bp
 FancJ-like_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006281 P DNA repair
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0031965 C nuclear membrane
GO:0032508 P DNA duplex unwinding
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
2009 O_BomoASG11809_complete:A_BomoASG_c27247_g1_i1
145bp
2010 O_BomoASG1180_internal:A_BomoASG_c7012_g1_i1
116bp
 antimicrobial_protein_6Tox_precursor_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005614 C interstitial matrix
GO:0005615 C extracellular space
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0007162 P negative regulation of cell adhesion
GO:0007528 P neuromuscular junction development
GO:0008284 P positive regulation of cell population proliferation
GO:0009611 P response to wounding
GO:0009612 P response to mechanical stimulus
GO:0010628 P positive regulation of gene expression
GO:0014012 P peripheral nervous system axon regeneration
GO:0016020 C membrane
GO:0030198 P extracellular matrix organization
GO:0031012 C extracellular matrix
GO:0031175 P neuron projection development
GO:0042060 P wound healing
GO:0042127 P regulation of cell population proliferation
GO:0042475 P odontogenesis of dentin-containing tooth
GO:0045471 P response to ethanol
GO:0045545 F syndecan binding
GO:0060447 P bud outgrowth involved in lung branching
GO:0060739 P mesenchymal-epithelial cell signaling involved in prostate gland development
GO:0060740 P prostate gland epithelium morphogenesis
GO:0071300 P cellular response to retinoic acid
GO:0071305 P cellular response to vitamin D
GO:0071774 P response to fibroblast growth factor
GO:0071799 P cellular response to prostaglandin D stimulus
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