SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
181 O_BomoASG10163_5prime_partial:A_BomoASG_c26108_g1_i1
384bp
 replication_factor_C4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005663 C DNA replication factor C complex
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0019899 F enzyme binding
GO:0031390 C Ctf18 RFC-like complex
GO:0043142 F single-stranded DNA helicase activity
GO:1900264 P positive regulation of DNA-directed DNA polymerase activity
182 O_BomoASG10164_internal:A_BomoASG_c26111_g1_i1
281bp
 uncharacterized_protein_LOC110385832_[Bombyx_mori]
183 O_BomoASG10165_5prime_partial:A_BomoASG_c26111_g2_i1
111bp
 uncharacterized_protein_LOC110385832_[Bombyx_mori]
184 O_BomoASG10166_complete:A_BomoASG_c26112_g1_i1
415bp
 uncharacterized_protein_LOC101744553_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005730 C nucleolus
GO:0008150 P biological_process
GO:0046872 F metal ion binding
185 O_BomoASG10167_complete:A_BomoASG_c26112_g1_i1
184bp
186 O_BomoASG10168_5prime_partial:A_BomoASG_c26112_g1_i3
244bp
 uncharacterized_protein_LOC101744553_isoform_X2_[Bombyx_mori]
187 O_BomoASG10169_3prime_partial:A_BomoASG_c26112_g1_i3
177bp
188 O_BomoASG1016_5prime_partial:A_BomoASG_c6397_g1_i2
106bp
189 O_BomoASG10170_3prime_partial:A_BomoASG_c26115_g1_i1
592bp
 E3_ubiquitin-protein_ligase_SH3RF1_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030027 C lamellipodium
GO:0042995 C cell projection
GO:0046328 P regulation of JNK cascade
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
190 O_BomoASG10171_3prime_partial:A_BomoASG_c26116_g1_i1
218bp
 myelin_regulatory_factor_isoform_X3_[Bombyx_mori]
191 O_BomoASG10172_5prime_partial:A_BomoASG_c26120_g1_i1
113bp
192 O_BomoASG10173_complete:A_BomoASG_c26120_g1_i2
127bp
193 O_BomoASG10174_internal:A_BomoASG_c26121_g1_i1
299bp
 nesprin-1_isoform_X2_[Bombyx_mori]
194 O_BomoASG10175_internal:A_BomoASG_c26121_g2_i1
233bp
 nesprin-1_isoform_X1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
195 O_BomoASG10176_internal:A_BomoASG_c26121_g3_i1
306bp
 nesprin-1_isoform_X2_[Bombyx_mori]
196 O_BomoASG10177_complete:A_BomoASG_c26123_g1_i1
495bp
 solute_carrier_family_41_member_1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0008324 F cation transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0070838 P metal ion transport
GO:0072509 F inorganic cation transmembrane transporter activity
GO:0098655 P cation transmembrane transport
197 O_BomoASG10178_complete:A_BomoASG_c26123_g1_i1
125bp
198 O_BomoASG10179_internal:A_BomoASG_c26124_g1_i1
418bp
 eIF-2-alpha_kinase_GCN2_isoform_X2_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0002250 P adaptive immune response
GO:0002286 P T cell activation involved in immune response
GO:0002376 P immune system process
GO:0002821 P positive regulation of adaptive immune response
GO:0003723 F RNA binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004694 F eukaryotic translation initiation factor 2alpha kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0007399 P nervous system development
GO:0007612 P learning
GO:0007616 P long-term memory
GO:0010998 P regulation of translational initiation by eIF2 alpha phosphorylation
GO:0016032 P viral process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019081 P viral translation
GO:0022626 C cytosolic ribosome
GO:0032057 P negative regulation of translational initiation in response to stress
GO:0032792 P negative regulation of CREB transcription factor activity
GO:0034198 P cellular response to amino acid starvation
GO:0034644 P cellular response to UV
GO:0036492 P eiF2alpha phosphorylation in response to endoplasmic reticulum stress
GO:0039520 P induction by virus of host autophagy
GO:0044828 P negative regulation by host of viral genome replication
GO:0045665 P negative regulation of neuron differentiation
GO:0045947 P negative regulation of translational initiation
GO:0046777 P protein autophosphorylation
GO:0051607 P defense response to virus
GO:0060259 P regulation of feeding behavior
GO:0060733 P GCN2-mediated signaling
GO:0070417 P cellular response to cold
GO:0071264 P positive regulation of translational initiation in response to starvation
GO:1900273 P positive regulation of long-term synaptic potentiation
GO:1990138 P neuron projection extension
GO:1990253 P cellular response to leucine starvation
199 O_BomoASG1017_5prime_partial:A_BomoASG_c6398_g1_i1
130bp
 ribosomal_protein_L34_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
200 O_BomoASG10180_5prime_partial:A_BomoASG_c26125_g1_i1
139bp
 soluble_NSF_attachment_protein_29_[Bombyx_mori]
GO:0005484 F SNAP receptor activity
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016082 P synaptic vesicle priming
GO:0016324 C apical plasma membrane
GO:0019905 F syntaxin binding
GO:0030054 C cell junction
GO:0030728 P ovulation
GO:0031201 C SNARE complex
GO:0031629 P synaptic vesicle fusion to presynaptic active zone membrane
GO:0043005 C neuron projection
GO:0045202 C synapse
GO:0046903 P secretion
GO:0055037 C recycling endosome
GO:0065002 P intracellular protein transmembrane transport
GO:0098793 C presynapse
201 O_BomoASG10181_complete:A_BomoASG_c26125_g1_i2
266bp
 soluble_NSF_attachment_protein_29_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000421 C autophagosome membrane
GO:0005484 F SNAP receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0006810 P transport
GO:0006914 P autophagy
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016082 P synaptic vesicle priming
GO:0019905 F syntaxin binding
GO:0020018 C ciliary pocket membrane
GO:0030030 P cell projection organization
GO:0031201 C SNARE complex
GO:0031410 C cytoplasmic vesicle
GO:0031629 P synaptic vesicle fusion to presynaptic active zone membrane
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0043195 C terminal bouton
GO:0060170 C ciliary membrane
GO:0097352 P autophagosome maturation
202 O_BomoASG10182_complete:A_BomoASG_c26126_g1_i1
695bp
 mediator_of_RNA_polymerase_II_transcription_subunit_25_isoform_X2_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0002805 P regulation of antimicrobial peptide biosynthetic process
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007399 P nervous system development
GO:0016592 C mediator complex
203 O_BomoASG10183_complete:A_BomoASG_c26126_g1_i1
100bp
204 O_BomoASG10184_complete:A_BomoASG_c26126_g1_i2
690bp
 mediator_of_RNA_polymerase_II_transcription_subunit_25_isoform_X4_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0002805 P regulation of antimicrobial peptide biosynthetic process
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007399 P nervous system development
GO:0016592 C mediator complex
205 O_BomoASG10185_complete:A_BomoASG_c26126_g1_i2
100bp
206 O_BomoASG10186_complete:A_BomoASG_c26127_g1_i1
696bp
 stromal_interaction_molecule_1_isoform_X1_[Bombyx_mori]
GO:0002115 P store-operated calcium entry
GO:0005509 F calcium ion binding
GO:0005513 P detection of calcium ion
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0007155 P cell adhesion
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0012505 C endomembrane system
GO:0015279 F store-operated calcium channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022416 P chaeta development
GO:0032237 P activation of store-operated calcium channel activity
GO:0046872 F metal ion binding
GO:0048763 F calcium-induced calcium release activity
GO:0051209 P release of sequestered calcium ion into cytosol
GO:0051533 P positive regulation of calcineurin-NFAT signaling cascade
GO:0051924 P regulation of calcium ion transport
GO:0070588 P calcium ion transmembrane transport
GO:1903779 P regulation of cardiac conduction
207 O_BomoASG10187_complete:A_BomoASG_c26127_g1_i1
117bp
208 O_BomoASG10188_complete:A_BomoASG_c26127_g1_i2
501bp
 stromal_interaction_molecule_1_isoform_X1_[Bombyx_mori]
GO:0002115 P store-operated calcium entry
GO:0005509 F calcium ion binding
GO:0005513 P detection of calcium ion
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0007155 P cell adhesion
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0012505 C endomembrane system
GO:0015279 F store-operated calcium channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022416 P chaeta development
GO:0032237 P activation of store-operated calcium channel activity
GO:0046872 F metal ion binding
GO:0048763 F calcium-induced calcium release activity
GO:0051209 P release of sequestered calcium ion into cytosol
GO:0051533 P positive regulation of calcineurin-NFAT signaling cascade
GO:0051924 P regulation of calcium ion transport
GO:0070588 P calcium ion transmembrane transport
GO:1903779 P regulation of cardiac conduction
209 O_BomoASG10189_complete:A_BomoASG_c26127_g1_i2
117bp
210 O_BomoASG1018_internal:A_BomoASG_c6402_g1_i1
268bp
 fasciclin-2_[Bombyx_mori]
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
previous next from show/32479

- SilkBase 1999-2023 -