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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10171 O_BomoASG19155_5prime_partial:A_BomoASG_c30458_g1_i1
247bp
 prolyl_3-hydroxylase_sudestada1_[Bombyx_mori]
10172 O_BomoASG19156_5prime_partial:A_BomoASG_c30458_g1_i1
221bp
 prolyl_3-hydroxylase_sudestada1_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006449 P regulation of translational termination
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0018126 P protein hydroxylation
GO:0019511 P peptidyl-proline hydroxylation
GO:0031418 F L-ascorbic acid binding
GO:0031543 F peptidyl-proline dioxygenase activity
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
10173 O_BomoASG19157_5prime_partial:A_BomoASG_c30459_g1_i1
275bp
 uncharacterized_protein_LOC101739289_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005773 C vacuole
GO:0005774 C vacuolar membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017137 F small GTPase binding
GO:0033180 C proton-transporting V-type ATPase, V1 domain
GO:0045669 P positive regulation of osteoblast differentiation
GO:0045780 P positive regulation of bone resorption
GO:0045851 P pH reduction
GO:0045921 P positive regulation of exocytosis
GO:0046933 F proton-transporting ATP synthase activity, rotational mechanism
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
GO:0051656 P establishment of organelle localization
GO:0070062 C extracellular exosome
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:2001206 P positive regulation of osteoclast development
10174 O_BomoASG19158_complete:A_BomoASG_c30459_g1_i1
135bp
10175 O_BomoASG19159_3prime_partial:A_BomoASG_c30459_g2_i1
1202bp
 uncharacterized_protein_LOC101739289_isoform_X1_[Bombyx_mori]
10176 O_BomoASG1915_complete:A_BomoASG_c12254_g1_i1
497bp
 PREDICTED:_paired_box_protein_Pax-6-like_[Amyelois_transitella]
GO:0000790 C chromatin
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001755 P neural crest cell migration
GO:0001764 P neuron migration
GO:0002064 P epithelial cell development
GO:0003309 P type B pancreatic cell differentiation
GO:0003310 P pancreatic A cell differentiation
GO:0003322 P pancreatic A cell development
GO:0003677 F DNA binding
GO:0003680 F minor groove of adenine-thymine-rich DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007417 P central nervous system development
GO:0007420 P brain development
GO:0010628 P positive regulation of gene expression
GO:0010975 P regulation of neuron projection development
GO:0016567 P protein ubiquitination
GO:0021510 P spinal cord development
GO:0021549 P cerebellum development
GO:0021593 P rhombomere morphogenesis
GO:0021772 P olfactory bulb development
GO:0022027 P interkinetic nuclear migration
GO:0030154 P cell differentiation
GO:0030902 P hindbrain development
GO:0032869 P cellular response to insulin stimulus
GO:0035690 P cellular response to xenobiotic stimulus
GO:0042660 P positive regulation of cell fate specification
GO:0043565 F sequence-specific DNA binding
GO:0044344 P cellular response to fibroblast growth factor stimulus
GO:0045471 P response to ethanol
GO:0045664 P regulation of neuron differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048708 P astrocyte differentiation
GO:0050767 P regulation of neurogenesis
GO:0050768 P negative regulation of neurogenesis
GO:0060041 P retina development in camera-type eye
GO:0061351 P neural precursor cell proliferation
GO:0070094 P positive regulation of glucagon secretion
GO:0071333 P cellular response to glucose stimulus
GO:0071380 P cellular response to prostaglandin E stimulus
GO:1901142 P insulin metabolic process
GO:2001224 P positive regulation of neuron migration
10177 O_BomoASG19160_complete:A_BomoASG_c30459_g2_i3
1139bp
 uncharacterized_protein_LOC101739289_isoform_X2_[Bombyx_mori]
10178 O_BomoASG19161_5prime_partial:A_BomoASG_c30459_g1_i2
202bp
 uncharacterized_protein_LOC101739289_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005773 C vacuole
GO:0005774 C vacuolar membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017137 F small GTPase binding
GO:0033180 C proton-transporting V-type ATPase, V1 domain
GO:0045669 P positive regulation of osteoblast differentiation
GO:0045780 P positive regulation of bone resorption
GO:0045851 P pH reduction
GO:0045921 P positive regulation of exocytosis
GO:0046933 F proton-transporting ATP synthase activity, rotational mechanism
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
GO:0051656 P establishment of organelle localization
GO:0070062 C extracellular exosome
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:2001206 P positive regulation of osteoclast development
10179 O_BomoASG19162_complete:A_BomoASG_c30459_g1_i2
135bp
10180 O_BomoASG19163_complete:A_BomoASG_c30460_g1_i1
293bp
 nitric_oxide_synthase-interacting_protein_homolog_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0043086 P negative regulation of catalytic activity
GO:0044822 F RNA binding
GO:0050999 P regulation of nitric-oxide synthase activity
GO:0051001 P negative regulation of nitric-oxide synthase activity
GO:0071013 C catalytic step 2 spliceosome
10181 O_BomoASG19164_5prime_partial:A_BomoASG_c30460_g1_i2
139bp
 nitric_oxide_synthase-interacting_protein_homolog_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0043086 P negative regulation of catalytic activity
GO:0044822 F RNA binding
GO:0050999 P regulation of nitric-oxide synthase activity
GO:0051001 P negative regulation of nitric-oxide synthase activity
GO:0071013 C catalytic step 2 spliceosome
10182 O_BomoASG19165_5prime_partial:A_BomoASG_c30460_g1_i3
165bp
 nitric_oxide_synthase-interacting_protein_homolog_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0043086 P negative regulation of catalytic activity
GO:0044822 F RNA binding
GO:0050999 P regulation of nitric-oxide synthase activity
GO:0051001 P negative regulation of nitric-oxide synthase activity
GO:0071013 C catalytic step 2 spliceosome
10183 O_BomoASG19166_3prime_partial:A_BomoASG_c30461_g1_i1
227bp
 elongator_complex_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006952 P defense response
GO:0007165 P signal transduction
GO:0008023 C transcription elongation factor complex
GO:0008607 F phosphorylase kinase regulator activity
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0016246 P RNA interference
GO:0045859 P regulation of protein kinase activity
10184 O_BomoASG19167_internal:A_BomoASG_c30461_g1_i2
317bp
 elongator_complex_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006952 P defense response
GO:0007165 P signal transduction
GO:0008023 C transcription elongation factor complex
GO:0008607 F phosphorylase kinase regulator activity
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0016246 P RNA interference
GO:0045859 P regulation of protein kinase activity
10185 O_BomoASG19168_internal:A_BomoASG_c30461_g2_i1
248bp
 elongator_complex_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008023 C transcription elongation factor complex
GO:0008607 F phosphorylase kinase regulator activity
GO:0030335 P positive regulation of cell migration
GO:0033588 C elongator holoenzyme complex
GO:0045859 P regulation of protein kinase activity
10186 O_BomoASG19169_complete:A_BomoASG_c30462_g1_i1
323bp
 E3_ubiquitin-protein_ligase_MARCH5_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051020 F GTPase binding
GO:0051865 P protein autoubiquitination
GO:0070585 P protein localization to mitochondrion
GO:0090140 P regulation of mitochondrial fission
GO:0090141 P positive regulation of mitochondrial fission
GO:0090344 P negative regulation of cell aging
10187 O_BomoASG1916_complete:A_BomoASG_c12254_g1_i2
387bp
 paired_box_protein_Pax-3-A_[Bombyx_mori]
GO:0000790 C chromatin
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001755 P neural crest cell migration
GO:0001764 P neuron migration
GO:0002064 P epithelial cell development
GO:0003309 P type B pancreatic cell differentiation
GO:0003310 P pancreatic A cell differentiation
GO:0003322 P pancreatic A cell development
GO:0003677 F DNA binding
GO:0003680 F minor groove of adenine-thymine-rich DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007417 P central nervous system development
GO:0007420 P brain development
GO:0010628 P positive regulation of gene expression
GO:0010975 P regulation of neuron projection development
GO:0016567 P protein ubiquitination
GO:0021510 P spinal cord development
GO:0021549 P cerebellum development
GO:0021593 P rhombomere morphogenesis
GO:0021772 P olfactory bulb development
GO:0022027 P interkinetic nuclear migration
GO:0030154 P cell differentiation
GO:0030902 P hindbrain development
GO:0032869 P cellular response to insulin stimulus
GO:0035690 P cellular response to xenobiotic stimulus
GO:0042660 P positive regulation of cell fate specification
GO:0043565 F sequence-specific DNA binding
GO:0044344 P cellular response to fibroblast growth factor stimulus
GO:0045471 P response to ethanol
GO:0045664 P regulation of neuron differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048708 P astrocyte differentiation
GO:0050767 P regulation of neurogenesis
GO:0050768 P negative regulation of neurogenesis
GO:0060041 P retina development in camera-type eye
GO:0061351 P neural precursor cell proliferation
GO:0070094 P positive regulation of glucagon secretion
GO:0071333 P cellular response to glucose stimulus
GO:0071380 P cellular response to prostaglandin E stimulus
GO:1901142 P insulin metabolic process
GO:2001224 P positive regulation of neuron migration
10188 O_BomoASG19170_complete:A_BomoASG_c30462_g1_i2
198bp
 E3_ubiquitin-protein_ligase_MARCH5_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051020 F GTPase binding
GO:0051865 P protein autoubiquitination
GO:0070585 P protein localization to mitochondrion
GO:0090140 P regulation of mitochondrial fission
GO:0090141 P positive regulation of mitochondrial fission
GO:0090344 P negative regulation of cell aging
10189 O_BomoASG19171_5prime_partial:A_BomoASG_c30462_g1_i4
165bp
 E3_ubiquitin-protein_ligase_MARCH5_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051020 F GTPase binding
GO:0051865 P protein autoubiquitination
GO:0070585 P protein localization to mitochondrion
GO:0090140 P regulation of mitochondrial fission
GO:0090141 P positive regulation of mitochondrial fission
GO:0090344 P negative regulation of cell aging
10190 O_BomoASG19172_3prime_partial:A_BomoASG_c30463_g1_i1
474bp
 uncharacterized_protein_LOC101740264_[Bombyx_mori]
10191 O_BomoASG19173_3prime_partial:A_BomoASG_c30463_g1_i2
474bp
 uncharacterized_protein_LOC101740264_[Bombyx_mori]
10192 O_BomoASG19174_3prime_partial:A_BomoASG_c30463_g1_i3
474bp
 uncharacterized_protein_LOC101740264_[Bombyx_mori]
10193 O_BomoASG19175_internal:A_BomoASG_c30464_g1_i1
362bp
 WD_repeat-containing_protein_19_isoform_X4_[Bombyx_mori]
GO:0000902 P cell morphogenesis
GO:0001701 P in utero embryonic development
GO:0003674 F molecular_function
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0007224 P smoothened signaling pathway
GO:0008406 P gonad development
GO:0030030 P cell projection organization
GO:0030326 P embryonic limb morphogenesis
GO:0030991 C intraciliary transport particle A
GO:0031076 P embryonic camera-type eye development
GO:0031513 C non-motile cilium
GO:0031514 C motile cilium
GO:0032391 C photoreceptor connecting cilium
GO:0035721 P intraciliary retrograde transport
GO:0042384 P cilium assembly
GO:0042471 P ear morphogenesis
GO:0042995 C cell projection
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0050877 P nervous system process
GO:0055123 P digestive system development
GO:0060271 P cilium assembly
GO:0060830 P ciliary receptor clustering involved in smoothened signaling pathway
GO:0060831 P smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0061055 P myotome development
GO:0061512 P protein localization to cilium
10194 O_BomoASG19176_complete:A_BomoASG_c30465_g1_i1
879bp
 cold_shock_domain-containing_protein_E1_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0005743 C mitochondrial inner membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0044822 F RNA binding
GO:0070937 C CRD-mediated mRNA stability complex
GO:0070966 P nuclear-transcribed mRNA catabolic process, no-go decay
10195 O_BomoASG19177_complete:A_BomoASG_c30465_g1_i1
192bp
10196 O_BomoASG19178_complete:A_BomoASG_c30465_g1_i1
135bp
10197 O_BomoASG19179_complete:A_BomoASG_c30465_g1_i1
128bp
10198 O_BomoASG1917_complete:A_BomoASG_c12254_g1_i2
171bp
 Paired_box_protein_Pax-6_[Papilio_machaon]
10199 O_BomoASG19180_complete:A_BomoASG_c30465_g1_i1
105bp
10200 O_BomoASG19181_complete:A_BomoASG_c30465_g1_i3
849bp
 cold_shock_domain-containing_protein_E1_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0005743 C mitochondrial inner membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0044822 F RNA binding
GO:0070937 C CRD-mediated mRNA stability complex
GO:0070966 P nuclear-transcribed mRNA catabolic process, no-go decay
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